Glomeromycota: Cluster 146

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)3
Shortest sequence925 nt -- Gigaspora margarita partial act gene for actin, exons 1-4, isolate UY278.9_spore1.
Longest sequence945 nt -- Acaulospora laevis partial act gene for actin, exons 1-4, isolate UY991.5.3.2_spore3.
Maximum alignment density1 0.986
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Acaulospora laevis 37652182 78545 945 Acaulospora laevis partial act gene for actin, exons 1-4, isolate UY991.5.3.2_spore3.
Acaulospora laevis 37652184 78545 945 Acaulospora laevis partial act gene for actin, exons 1-4, isolate UY991.5.3.2_spore2.
Gigaspora margarita 37653274 4874 925 Gigaspora margarita partial act gene for actin, exons 1-4, isolate UY278.9_spore1.
Gigaspora margarita 37653276 4874 925 Gigaspora margarita partial act gene for actin, exons 1-4, isolate UY278.9_spore2.
Scutellospora dipurpurescens 37653284 78547 928 Scutellospora dipurpurescens partial act gene for actin, exons 1-4, isolate UY1206.1.6_spore4, clone 9.
Scutellospora dipurpurescens 37653278 78547 929 Scutellospora dipurpurescens partial act gene for actin, exons 1-4, isolate UY1206.1.6_spore11.
Scutellospora dipurpurescens 37653280 78547 929 Scutellospora dipurpurescens partial act gene for actin, exons 1-4, isolate UY1206.1.6_spore6.
Scutellospora dipurpurescens 37653282 78547 929 Scutellospora dipurpurescens partial act gene for actin, exons 1-4, isolate UY1206.1.6_spore4.


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