Glomeromycota: Cluster 174

Number of sequences (GIs)15
Number of distinct taxon IDs (TIs)9
Shortest sequence671 nt -- Archaeospora sp. 0217 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Longest sequence1106 nt -- Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clones pFD120-6 and pFD120-9.
Maximum alignment density1 0.758
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Ambispora fennica 126349128 453567 1103 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clone pFD114-12.
Ambispora fennica 126349134 453567 1106 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clones pFD120-6 and pFD120-9.
Ambispora fennica 126349123 453567 807 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clone pFD120-10.
Ambispora fennica 126349124 453567 811 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clones pFD120-13 and pFD120-25.
Ambispora fennica 126349130 453567 1104 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clone pFD114-5.
Ambispora fennica 126349132 453567 1104 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clone pFD114-6.
Ambispora fennica 126349126 453567 1104 Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clones pFD114-3 and pFD114-9.
Archaeospora sp. 0201 32346324 218249 699 Archaeospora sp. 0201 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0208 32346325 218250 673 Archaeospora sp. 0208 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0210 32346326 218251 673 Archaeospora sp. 0210 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0212 32346328 218253 672 Archaeospora sp. 0212 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0214 32346330 218255 672 Archaeospora sp. 0214 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0216 32346331 218256 697 Archaeospora sp. 0216 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0217 32346332 218257 671 Archaeospora sp. 0217 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Archaeospora sp. 0224 32346333 218258 671 Archaeospora sp. 0224 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.


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