Glomeromycota: Cluster 176

Number of sequences (GIs)18
Number of distinct taxon IDs (TIs)6
Shortest sequence456 nt -- Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene and ITS2, clone 1061-22.
Longest sequence582 nt -- Acaulospora sp. 1v5.4/1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v5.4-1.
Maximum alignment density1 0.948
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Acaulospora alpina 89994137 319632 456 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene and ITS2, clone 1061-22.
Acaulospora alpina 90185962 319632 547 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1065/32.
Acaulospora alpina 90185961 319632 572 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1064/1.
Acaulospora alpina 90185964 319632 571 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1060/33.
Acaulospora alpina 90185963 319632 564 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1070/22.
Acaulospora alpina 90185956 319632 562 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1043/25.
Acaulospora alpina 90185957 319632 561 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1043/27.
Acaulospora alpina 90185959 319632 552 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1045/43.
Acaulospora alpina 90185958 319632 551 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1044/39.
Acaulospora alpina 90185960 319632 552 Acaulospora alpina partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1045/50.
Acaulospora lacunosa 90185967 62089 548 Acaulospora lacunosa partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1048/23.
Acaulospora lacunosa 90185968 62089 545 Acaulospora lacunosa partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1048/25.
Acaulospora lacunosa 90185966 62089 560 Acaulospora lacunosa partial 18S rRNA gene, ITS1, 5.8S rRNA gene, and ITS2, clone 1047/13.
Acaulospora lacunosa 90185965 62089 561 Acaulospora lacunosa partial 18S rRNA gene, ITS1, 5.8S rRNA gene and ITS2, clone 1046/7.
Acaulospora laevis 6686774 78545 498 Acaulospora laevis 18S rRNA (partial), 5.8S rRNA and 28S rRNA (partial) genes and internal transcribed spacers 1 and 2 (ITS1, ITS2), isolate AU211.
Acaulospora sp. 1v29.1 33386186 203517 573 Acaulospora sp. 1v29.1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v29.1.
Acaulospora sp. 1v29.2 33386187 203518 573 Acaulospora sp. 1v29.2 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v29.2.
Acaulospora sp. 1v5.4-1 33386185 203509 582 Acaulospora sp. 1v5.4/1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v5.4-1.


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