Glomeromycota: Cluster 27

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)4
Shortest sequence2890 nt -- Glomus intraradices isolate AFTOL-ID 845 RNA polymerase II second largest subunit (RPB2) gene, partial cds.
Longest sequence3584 nt -- Gigaspora gigantea RNA polymerase II second largest subunit (RPB2) gene, partial cds.
Maximum alignment density1 0.921
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Gigaspora gigantea 120561256 27379 3584 Gigaspora gigantea RNA polymerase II second largest subunit (RPB2) gene, partial cds.
Glomus intraradices 83415502 4876 2890 Glomus intraradices isolate AFTOL-ID 845 RNA polymerase II second largest subunit (RPB2) gene, partial cds.
Glomus mosseae 120561252 27381 3549 Glomus mosseae RNA polymerase II second largest subunit (RPB2) gene, RPB2-1 allele, partial cds.
Glomus mosseae 120561254 27381 3558 Glomus mosseae RNA polymerase II second largest subunit (RPB2) gene, RPB2-2 allele, partial cds.
Scutellospora heterogama 83415474 43246 2932 Scutellospora heterogama isolate AFTOL-ID 138 RNA polymerase II second largest subunit (RPB2) gene, partial cds.


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