Glomeromycota: Cluster 39

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)5
Shortest sequence614 nt -- Glomus intraradices strain IRBV isolate GiCHS3 chitin synthase (CHS) gene, partial cds.
Longest sequence622 nt -- Glomus mosseae chitin synthase (CHS) gene, partial cds.
Maximum alignment density1 0.993
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

Download sequences as...
Download tree ...


NCBI taxon name GI TI Length Defline
Acaulospora scrobiculata 13324476 78546 617 Acaulospora scrobiculata strain BR984-4 isolate AsCHS1 chitin synthase (CHS) gene, partial cds.
Gigaspora margarita 13324484 4874 617 Gigaspora margarita strain NC114B isolate GimCHS6 chitin synthase (CHS) gene, partial cds.
Glomus intraradices 13324488 4876 617 Glomus intraradices strain BR846 isolate GiBCHS1 chitin synthase (CHS) gene, partial cds.
Glomus intraradices 13324482 4876 614 Glomus intraradices strain IRBV isolate GiCHS3 chitin synthase (CHS) gene, partial cds.
Glomus mosseae 6572476 27381 622 Glomus mosseae chitin synthase (CHS) gene, partial cds.
Glomus mosseae 13324486 27381 617 Glomus mosseae strain UK127 isolate GmCHS3 chitin synthase (CHS) gene, partial cds.
Glomus mosseae 13324480 27381 618 Glomus mosseae strain WY108 isolate GmWCHS1 chitin synthase (CHS) gene, partial cds.
Scutellospora calospora 13324478 85575 617 Scutellospora calospora strain NY348-5 isolate ScCHS3 chitin synthase (CHS) gene, partial cds.


Back to taxonomic hierarchy view
Back to Phylota Browser home