Glomeromycota: Cluster 9

Number of sequences (GIs)12
Number of distinct taxon IDs (TIs)5
Shortest sequence1522 nt -- Glomus proliferum partial RPB1 gene for RNA polymerase II large subunit, isolate DAOM226389, clone 407_54.
Longest sequence3476 nt -- Gigaspora gigantea RNA polymerase II largest subunit (RPB1) gene, partial cds.
Maximum alignment density1 0.515
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Gigaspora gigantea 120561222 27379 3476 Gigaspora gigantea RNA polymerase II largest subunit (RPB1) gene, partial cds.
Glomus intraradices 149845588 4876 1539 Glomus intraradices partial RPB1 gene for RNA polymerase II largest subunit, isolate DAOM197198.
Glomus intraradices 83320461 4876 1833 Glomus intraradices isolate AFTOL-ID 845 RNA polymerase II largest subunit (RPB1) gene, partial cds.
Glomus intraradices 149845587 4876 1574 Glomus intraradices partial RPB1 pseudogene for RNA polymerase II large subunit, isolate BEG158.
Glomus mosseae 149845593 27381 1530 Glomus mosseae partial RPB1 pseodogene for RNA polymerase II large subunit, isolate ISCB13, clone 410_22.
Glomus mosseae 83320439 27381 1836 Glomus mosseae isolate AFTOL-ID 139 RNA polymerase II largest subunit (RPB1) gene, partial cds.
Glomus mosseae 149845591 27381 1568 Glomus mosseae partial RPB1 gene for RNA polymerase II large subunit, isolate ISCB13, clone 410_32.
Glomus proliferum 149845599 119559 1522 Glomus proliferum partial RPB1 gene for RNA polymerase II large subunit, isolate DAOM226389, clone 407_54.
Glomus proliferum 149845603 119559 1524 Glomus proliferum partial RPB1 gene for RNA polymerase II large subunit, isolate DAOM226389, clone 407_52.
Glomus proliferum 149845601 119559 1524 Glomus proliferum partial RPB1 gene for RNA polymerase II large subunit, isolate DAOM226389, clone 407_49.
Glomus proliferum 149845596 119559 1583 Glomus proliferum partial RPB1 gene for RNA polymerase II large subunit, isolate DAOM226389, clone 407_56.
Scutellospora heterogama 83320463 43246 1979 Scutellospora heterogama isolate AFTOL-ID 138 RNA polymerase II largest subunit (RPB1) gene, partial cds.


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