Alveolata: Cluster 952

Number of sequences (GIs)13
Number of distinct taxon IDs (TIs)10
Shortest sequence107 nt -- Eimeria mitis 5S ribosomal RNA gene, partial sequence.
Longest sequence122 nt -- C.cohnii 5S ribosomal RNA.
Maximum alignment density1 0.942
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Crypthecodinium cohnii 174034 2866 122 C.cohnii 5S ribosomal RNA.
Eimeria acervulina 62911497 5801 108 Eimeria acervulina 5S ribosomal RNA gene, partial sequence.
Eimeria brunetti 62911498 51314 114 Eimeria brunetti 5S ribosomal RNA gene, partial sequence.
Eimeria maxima 62911499 5804 118 Eimeria maxima 5S ribosomal RNA gene, partial sequence.
Eimeria mitis 62911501 44415 117 Eimeria mitis 5S ribosomal RNA gene, partial sequence.
Eimeria mitis 62911500 44415 107 Eimeria mitis 5S ribosomal RNA gene, partial sequence.
Eimeria necatrix 62911502 51315 117 Eimeria necatrix 5S ribosomal RNA gene, partial sequence.
Eimeria praecox 62911503 51316 117 Eimeria praecox 5S ribosomal RNA gene, partial sequence.
Eimeria pragensis 62911505 326033 114 Eimeria pragensis 5S ribosomal RNA gene, partial sequence.
Eimeria pragensis 62911506 326033 114 Eimeria pragensis 5S ribosomal RNA gene, partial sequence.
Eimeria tenella 62911504 5802 119 Eimeria tenella 5S ribosomal RNA gene, partial sequence.
Eimeria vermiformis 62911507 326035 114 Eimeria vermiformis 5S ribosomal RNA gene, partial sequence.
Eimeria vermiformis 62911508 326035 113 Eimeria vermiformis 5S ribosomal RNA gene, partial sequence.


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