Plasmodium (Vinckeia): Cluster 1 (up to parent cluster)

Number of sequences (GIs)7
Number of distinct taxon IDs (TIs)5
Shortest sequence607 nt -- Plasmodium atheruri strain R20 cytochrome b (cytb) gene, partial cds; mitochondrial.
Longest sequence614 nt -- Plasmodium berghei haplotype R2 cytochrome b gene, partial cds; mitochondrial.
Maximum alignment density1 0.992
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium atheruri 166361674 160486 607 Plasmodium atheruri strain R20 cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium berghei 121648043 5821 614 Plasmodium berghei haplotype R2 cytochrome b gene, partial cds; mitochondrial.
Plasmodium berghei 166361676 5821 607 Plasmodium berghei strain R2 cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium chabaudi 166361672 5825 607 Plasmodium chabaudi strain R16 cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium chabaudi 121648045 5825 614 Plasmodium chabaudi haplotype R16 cytochrome b gene, partial cds; mitochondrial.
Plasmodium vinckei 166361670 5860 607 Plasmodium vinckei strain R8 cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium yoelii 166361668 5861 607 Plasmodium yoelii strain R3 cytochrome b (cytb) gene, partial cds; mitochondrial.


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