Plasmodium (Vinckeia): Cluster 10 (up to parent cluster)

Number of sequences (GIs)26
Number of distinct taxon IDs (TIs)14
Shortest sequence499 nt -- Plasmodium vinckei strain R8 caseinolytic protease C (clpc) gene, partial cds; apicoplast.
Longest sequence641 nt -- Plasmodium berghei caseinolytic protease C (clpC) gene, partial cds; apicoplast gene for apicoplast product.
Maximum alignment density1 0.825
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium atheruri 89574277 160486 531 Plasmodium atheruri caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium atheruri 169136005 160486 508 Plasmodium atheruri strain R20 caseinolytic protease C (clpc) gene, partial cds; apicoplast.
Plasmodium berghei 14164939 5821 641 Plasmodium berghei caseinolytic protease C (clpC) gene, partial cds; apicoplast gene for apicoplast product.
Plasmodium berghei 89574281 5821 525 Plasmodium berghei isolate NK65 caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium berghei 89574279 5821 510 Plasmodium berghei isolate ANKA caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium chabaudi adami 89574283 5826 530 Plasmodium chabaudi adami isolate 408XZ caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium chabaudi adami 89574285 5826 529 Plasmodium chabaudi adami isolate 556KA caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium chabaudi chabaudi 89574289 31271 531 Plasmodium chabaudi chabaudi isolate CB caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium chabaudi chabaudi 89574287 31271 525 Plasmodium chabaudi chabaudi isolate AS caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium chabaudi 54399962 5825 641 Plasmodium chabaudi caseinolytic protease C (clpC) gene, partial cds; apicoplast.
Plasmodium chabaudi 169136003 5825 504 Plasmodium chabaudi strain R16 caseinolytic protease C (clpc) gene, partial cds; apicoplast.
Plasmodium vinckei brucechwatti 89574295 119398 500 Plasmodium vinckei brucechwatti caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei lentum 89574297 138297 501 Plasmodium vinckei lentum isolate 194ZZ caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei lentum 89574299 138297 512 Plasmodium vinckei lentum isolate 408XZ caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei petteri 89574303 138298 520 Plasmodium vinckei petteri isolate CR caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei petteri 89574301 138298 522 Plasmodium vinckei petteri isolate BS caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei vinckei 89574293 54757 530 Plasmodium vinckei vinckei isolate VIBA Cy Pl caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei 89574291 5860 501 Plasmodium vinckei isolate EL caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei 169136001 5860 499 Plasmodium vinckei strain R8 caseinolytic protease C (clpc) gene, partial cds; apicoplast.
Plasmodium yoelii killicki 89574307 283801 528 Plasmodium yoelii killicki isolate 193L caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium yoelii nigeriensis 89574309 31274 502 Plasmodium yoelii nigeriensis isolate N67 caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium yoelii yoelii 89574311 73239 500 Plasmodium yoelii yoelii isolate 17X caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium yoelii yoelii 89574313 73239 507 Plasmodium yoelii yoelii isolate 33X caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium yoelii yoelii 54399966 73239 641 Plasmodium yoelii yoelii caseinolytic protease C (clpC) gene, partial cds; apicoplast.
Plasmodium yoelii 89574305 5861 503 Plasmodium yoelii isolate EL caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium yoelii 169135999 5861 510 Plasmodium yoelii strain R3 caseinolytic protease C (clpc) gene, partial cds; apicoplast.


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