Plasmodium (Vinckeia): Cluster 2 (up to parent cluster)

Number of sequences (GIs)24
Number of distinct taxon IDs (TIs)14
Shortest sequence895 nt -- Plasmodium chabaudi chabaudi strain AS cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Longest sequence1005 nt -- Plasmodium atheruri cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Maximum alignment density1 0.979
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium atheruri 166361762 160486 985 Plasmodium atheruri strain R20 cytochrome oxidase subunit I (coI) gene, partial cds; mitochondrial.
Plasmodium atheruri 91982867 160486 1005 Plasmodium atheruri cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium berghei 91982869 5821 1005 Plasmodium berghei strain ANKA cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium berghei 121648112 5821 982 Plasmodium berghei cytochrome oxidase subunit I gene, partial cds; mitochondrial.
Plasmodium berghei 91982871 5821 982 Plasmodium berghei strain NK65 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium chabaudi adami 91982875 5826 953 Plasmodium chabaudi adami strain 556KA cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium chabaudi adami 91982873 5826 1005 Plasmodium chabaudi adami strain 408XZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium chabaudi chabaudi 91982877 31271 895 Plasmodium chabaudi chabaudi strain AS cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium chabaudi chabaudi 91982879 31271 1005 Plasmodium chabaudi chabaudi strain CB cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium chabaudi 121648114 5825 982 Plasmodium chabaudi cytochrome oxidase subunit I gene, partial cds; mitochondrial.
Plasmodium vinckei brucechwatti 91982885 119398 963 Plasmodium vinckei brucechwatti cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 91982889 138297 937 Plasmodium vinckei lentum strain 408XZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 91982887 138297 999 Plasmodium vinckei lentum strain 194ZZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 91982893 138298 954 Plasmodium vinckei petteri strain CR cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 91982891 138298 973 Plasmodium vinckei petteri strain BS cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei vinckei 91982883 54757 1005 Plasmodium vinckei vinckei strain VIBA Cy Pl cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei 91982881 5860 1004 Plasmodium vinckei strain EL cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei 166361760 5860 985 Plasmodium vinckei strain R8 cytochrome oxidase subunit I (coI) gene, partial cds; mitochondrial.
Plasmodium yoelii killicki 91982897 283801 1005 Plasmodium yoelii killicki strain 193L cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium yoelii nigeriensis 91982899 31274 1005 Plasmodium yoelii nigeriensis strain N67 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium yoelii yoelii 91982901 73239 1005 Plasmodium yoelii yoelii strain 17X cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium yoelii yoelii 91982903 73239 995 Plasmodium yoelii yoelii strain 33X cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium yoelii 166361758 5861 982 Plasmodium yoelii strain R3 cytochrome oxidase subunit I (coI) gene, partial cds; mitochondrial.
Plasmodium yoelii 91982895 5861 1005 Plasmodium yoelii strain EL cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.


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