Plasmodium (Vinckeia): Cluster 21 (up to parent cluster)

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)5
Shortest sequence546 nt -- Plasmodium chabaudi dihydrofolate reductase (DHFR) gene, partial cds.
Longest sequence585 nt -- Plasmodium yoelii yoelii dihydrofolate reductase (DHFR) gene, partial cds.
Maximum alignment density1 0.963
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium berghei 529503 5821 570 Plasmodium berghei dihydrofolate reductase (DHFR) gene, partial cds.
Plasmodium chabaudi 529505 5825 546 Plasmodium chabaudi dihydrofolate reductase (DHFR) gene, partial cds.
Plasmodium vinckei 529507 5860 546 Plasmodium vinckei dihydrofolate reductase (DHFR) gene, partial cds.
Plasmodium yoelii yoelii 529509 73239 585 Plasmodium yoelii yoelii dihydrofolate reductase (DHFR) gene, partial cds.
Plasmodium yoelii 529511 5861 570 Plasmodium yoelii dihydrofolate reductase (DHFR) gene, partial cds.


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