Plasmodium (Vinckeia): Cluster 54 (up to parent cluster)

Number of sequences (GIs)13
Number of distinct taxon IDs (TIs)8
Shortest sequence642 nt -- Plasmodium vinckei petteri ookinete surface antigen-like protein Pfs28 gene, complete cds.
Longest sequence1260 nt -- Plasmodium yoelii mRNA for 21 kDa ookinete surface protein, complete cds.
Maximum alignment density1 0.572
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium berghei 9797 5821 743 P.berghei Pbs21 mRNA for ookinete surface protein.
Plasmodium berghei 452938 5821 747 Pbs 21=ookinete surface antigen [Plasmodium berghei, 2.33, HP, mRNA, 747 nt].
Plasmodium chabaudi adami 11036768 5826 654 Plasmodium chabaudi adami strain KA556 ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium chabaudi adami 11036766 5826 654 Plasmodium chabaudi adami strain DS ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium chabaudi chabaudi 11036762 31271 654 Plasmodium chabaudi chabaudi strain AS ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium chabaudi chabaudi 11036760 31271 654 Plasmodium chabaudi chabaudi strain CB1455 ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium chabaudi chabaudi 11036764 31271 654 Plasmodium chabaudi chabaudi strain AJ ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium vinckei petteri 11036772 138298 642 Plasmodium vinckei petteri ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium vinckei vinckei 11036770 54757 648 Plasmodium vinckei vinckei ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium yoelii nigeriensis 11036782 31274 684 Plasmodium yoelii nigeriensis ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium yoelii yoelii 11036778 73239 684 Plasmodium yoelii yoelii strain YM ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium yoelii yoelii 11036780 73239 684 Plasmodium yoelii yoelii strain 17X ookinete surface antigen-like protein Pfs28 gene, complete cds.
Plasmodium yoelii 2208936 5861 1260 Plasmodium yoelii mRNA for 21 kDa ookinete surface protein, complete cds.


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