Plasmodium (Vinckeia): Cluster 57 (up to parent cluster)

Number of sequences (GIs)20
Number of distinct taxon IDs (TIs)13
Shortest sequence602 nt -- Plasmodium atheruri cysteine protease gene, partial cds.
Longest sequence987 nt -- Plasmodium berghei cysteine proteinase gene, partial cds.
Maximum alignment density1 0.653
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium atheruri 89511879 160486 602 Plasmodium atheruri cysteine protease gene, partial cds.
Plasmodium berghei 89511883 5821 625 Plasmodium berghei strain NK65 cysteine protease gene, partial cds.
Plasmodium berghei 89511881 5821 625 Plasmodium berghei strain ANKA cysteine protease gene, partial cds.
Plasmodium berghei 950237 5821 987 Plasmodium berghei cysteine proteinase gene, partial cds.
Plasmodium chabaudi adami 89511887 5826 628 Plasmodium chabaudi adami strain 556KA cysteine protease gene, partial cds.
Plasmodium chabaudi adami 89511885 5826 628 Plasmodium chabaudi adami strain 408XZ cysteine protease gene, partial cds.
Plasmodium chabaudi chabaudi 89511889 31271 628 Plasmodium chabaudi chabaudi strain AS cysteine protease gene, partial cds.
Plasmodium chabaudi chabaudi 89511891 31271 628 Plasmodium chabaudi chabaudi strain CB cysteine protease gene, partial cds.
Plasmodium vinckei brucechwatti 89511897 119398 628 Plasmodium vinckei brucechwatti cysteine protease gene, partial cds.
Plasmodium vinckei lentum 89511899 138297 631 Plasmodium vinckei lentum strain 194ZZ cysteine protease gene, partial cds.
Plasmodium vinckei lentum 89511901 138297 631 Plasmodium vinckei lentum strain 408XZ cysteine protease gene, partial cds.
Plasmodium vinckei petteri 89511903 138298 628 Plasmodium vinckei petteri strain BS cysteine protease gene, partial cds.
Plasmodium vinckei petteri 89511905 138298 628 Plasmodium vinckei petteri strain CR cysteine protease gene, partial cds.
Plasmodium vinckei vinckei 89511895 54757 628 Plasmodium vinckei vinckei strain VIBA Cy Pl cysteine protease gene, partial cds.
Plasmodium vinckei 89511893 5860 631 Plasmodium vinckei strain EL cysteine protease gene, partial cds.
Plasmodium yoelii killicki 89511909 283801 625 Plasmodium yoelii killicki strain 193L cysteine protease gene, partial cds.
Plasmodium yoelii nigeriensis 89511911 31274 625 Plasmodium yoelii nigeriensis strain N67 cysteine protease gene, partial cds.
Plasmodium yoelii yoelii 89511913 73239 625 Plasmodium yoelii yoelii strain 17X cysteine protease gene, partial cds.
Plasmodium yoelii yoelii 89511915 73239 625 Plasmodium yoelii yoelii strain 33X cysteine protease gene, partial cds.
Plasmodium yoelii 89511907 5861 625 Plasmodium yoelii strain EL cysteine protease gene, partial cds.


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