Plasmodium (Vinckeia): Cluster 66 (up to parent cluster)

Number of sequences (GIs)3
Number of distinct taxon IDs (TIs)3
Shortest sequence1435 nt -- Plasmodium chabaudi chabaudi chabaupain-2 gene, complete cds.
Longest sequence1454 nt -- Plasmodium vinckei vinckepain-2 mRNA, complete cds.
Maximum alignment density1 0.994
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium berghei 17978638 5821 1448 Plasmodium berghei berghepain-2 mRNA, complete cds.
Plasmodium chabaudi chabaudi 31096289 31271 1435 Plasmodium chabaudi chabaudi chabaupain-2 gene, complete cds.
Plasmodium vinckei 17978640 5860 1454 Plasmodium vinckei vinckepain-2 mRNA, complete cds.


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