Plasmodium (Vinckeia): Cluster 67 (up to parent cluster)

Number of sequences (GIs)12
Number of distinct taxon IDs (TIs)7
Shortest sequence489 nt -- Plasmodium berghei isolate NK65 RNA polymerase II (Rbp1) gene, partial cds.
Longest sequence815 nt -- P.berghei RNA polymerase largest subunit.
Maximum alignment density1 0.633
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium berghei 213866899 5821 489 Plasmodium berghei isolate NK65 RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium berghei 213866897 5821 489 Plasmodium berghei isolate ANKA RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium berghei 9794 5821 815 P.berghei RNA polymerase largest subunit.
Plasmodium vinckei lentum 213867915 138297 489 Plasmodium vinckei lentum isolate 194ZZ RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium vinckei 213867917 5860 489 Plasmodium vinckei strain EL RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium vinckei 213867911 5860 489 Plasmodium vinckei isolate VIBA CyO RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium vinckei 213867913 5860 489 Plasmodium vinckei isolate VIBA CyP1 RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium yoelii killicki 213866905 283801 489 Plasmodium yoelii killicki isolate 193L RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium yoelii nigeriensis 213866907 31274 489 Plasmodium yoelii nigeriensis isolate N67 RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium yoelii yoelii 213866901 73239 489 Plasmodium yoelii yoelii isolate 17X RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium yoelii yoelii 213866903 73239 489 Plasmodium yoelii yoelii isolate 33X RNA polymerase II (Rbp1) gene, partial cds.
Plasmodium yoelii 213867909 5861 489 Plasmodium yoelii strain EL RNA polymerase II (Rbp1) gene, partial cds.


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