Rhizaria: Cluster 122

Number of sequences (GIs)6
Number of distinct taxon IDs (TIs)1
Shortest sequence784 nt -- Bonamia ostreae partial act gene for actin, clone BoAct2-26.
Longest sequence869 nt -- Bonamia ostreae partial act gene for actin, clone BoAct1-2.
Maximum alignment density1 0.951
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Bonamia ostreae 160960035 126728 784 Bonamia ostreae partial act gene for actin, clone BoAct2-26.
Bonamia ostreae 160960037 126728 784 Bonamia ostreae partial act1 gene for actin, clone BoAct2-34.
Bonamia ostreae 160960039 126728 784 Bonamia ostreae partial act gene for actin, clone BoAct2-45.
Bonamia ostreae 160960031 126728 869 Bonamia ostreae partial act gene for actin, clone BoAct1-2.
Bonamia ostreae 160960033 126728 869 Bonamia ostreae partial act gene for actin, clone BoAct1-14.
Bonamia ostreae 160960029 126728 869 Bonamia ostreae partial act gene for actin, clone BoAct1-1.


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