Rhizaria: Cluster 127

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)2
Shortest sequence107 nt -- Bonamia exitiosa internal transcribed spacer 1, partial sequence.
Longest sequence176 nt -- Bonamia sp. ex Ostrea angasi clone 7 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Maximum alignment density1 0.951
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Bonamia exitiosa 188011077 362532 107 Bonamia exitiosa internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308995 535767 176 Bonamia sp. ex Ostrea angasi clone 7 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308992 535767 176 Bonamia sp. ex Ostrea angasi clone 4 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308993 535767 176 Bonamia sp. ex Ostrea angasi clone 5 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308994 535767 176 Bonamia sp. ex Ostrea angasi clone 6 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308989 535767 176 Bonamia sp. ex Ostrea angasi clone 1 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308990 535767 176 Bonamia sp. ex Ostrea angasi clone 2 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
Bonamia sp. ex Ostrea angasi 204308991 535767 176 Bonamia sp. ex Ostrea angasi clone 3 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence.


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