Rhizaria: Cluster 150

Number of sequences (GIs)4
Number of distinct taxon IDs (TIs)3
Shortest sequence1524 nt -- Chlorarachniophyceae sp. CCMP1408 translation elongation factor 1A-like cytosolic A mRNA, partial cds.
Longest sequence1651 nt -- Chlorarachnion reptans translation elongation factor 1A-like cytosolic B mRNA, partial cds.
Maximum alignment density1 0.958
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Chlorarachnion reptans 193875893 29199 1651 Chlorarachnion reptans translation elongation factor 1A-like cytosolic B mRNA, partial cds.
Chlorarachniophyceae sp. CCMP1408 193875889 544908 1535 Chlorarachniophyceae sp. CCMP1408 translation elongation factor 1A-like cytosolic B mRNA, partial cds.
Chlorarachniophyceae sp. CCMP1408 193875887 544908 1524 Chlorarachniophyceae sp. CCMP1408 translation elongation factor 1A-like cytosolic A mRNA, partial cds.
Gymnochlora stellata 193875895 67809 1616 Gymnochlora stellata translation elongation factor 1A-like cytosolic A mRNA, partial cds.


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