Rhizaria: Cluster 151

Number of sequences (GIs)10
Number of distinct taxon IDs (TIs)1
Shortest sequence490 nt -- Chlorarachnion reptans culture-collection PLYMOUTH:524A internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Longest sequence564 nt -- Chlorarachnion reptans culture-collection NIES:624 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Maximum alignment density1 0.954
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Chlorarachnion reptans 238909369 29199 499 Chlorarachnion reptans culture-collection PLYMOUTH:524B internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Chlorarachnion reptans 238909370 29199 533 Chlorarachnion reptans culture-collection PLYMOUTH:524C internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Chlorarachnion reptans 238909366 29199 545 Chlorarachnion reptans culture-collection PLYMOUTH:664 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Chlorarachnion reptans 238909367 29199 564 Chlorarachnion reptans culture-collection NIES:624 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.
Chlorarachnion reptans 238909368 29199 555 Chlorarachnion reptans culture-collection CCMP:239 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; nucleomorph.
Chlorarachnion reptans 238909371 29199 535 Chlorarachnion reptans culture-collection CCCM:449 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and partial 28S ribosomal RNA gene, partial sequence; nucleomorph.
Chlorarachnion reptans 238909372 29199 558 Chlorarachnion reptans culture-collection UTEX:2314 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and partial 28S ribosomal RNA gene, partial sequence; nucleomorph.
Chlorarachnion reptans 238909375 29199 564 Chlorarachnion reptans culture-collection NIES:1408 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence; nucleomorph.
Chlorarachnion reptans 238909376 29199 540 Chlorarachnion reptans strain Marburg internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence; nucleomorph.
Chlorarachnion reptans 238909363 29199 490 Chlorarachnion reptans culture-collection PLYMOUTH:524A internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; nucleomorph.


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