Rhizaria: Cluster 20

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)1
Shortest sequence1162 nt -- Globorotalia menardii small subunit ribosomal RNA gene, partial sequence.
Longest sequence1192 nt -- Globorotalia menardii gene for 18S rRNA, partial sequence, isolate: OKI_1.
Maximum alignment density1 0.989
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

Download sequences as...
Download tree ...


NCBI taxon name GI TI Length Defline
Globorotalia menardii 261823879 55304 1180 Globorotalia menardii gene for 18S rRNA, partial sequence, clone: OKI_1_3.
Globorotalia menardii 2582705 55304 1178 G.menardii DNA for 18S ribosomal RNA.
Globorotalia menardii 261823878 55304 1181 Globorotalia menardii gene for 18S rRNA, partial sequence, clone: OKI_1_2.
Globorotalia menardii 134026437 55304 1192 Globorotalia menardii gene for 18S rRNA, partial sequence, isolate: OKI_1.
Globorotalia menardii 2565093 55304 1162 Globorotalia menardii small subunit ribosomal RNA gene, partial sequence.


Back to taxonomic hierarchy view
Back to Phylota Browser home