Rhizaria: Cluster 204

Number of sequences (GIs)1
Number of distinct taxon IDs (TIs)1
Shortest sequence1345 nt -- Gymnochlora stellata chloroplast light-dependent protochlorophyllide reductase mRNA, complete cds; nuclear gene for chloroplast product.
Longest sequence1345 nt -- Gymnochlora stellata chloroplast light-dependent protochlorophyllide reductase mRNA, complete cds; nuclear gene for chloroplast product.
Maximum alignment density1 1.000
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

Download sequences as...
Download tree ...


NCBI taxon name GI TI Length Defline
Gymnochlora stellata 193875797 67809 1345 Gymnochlora stellata chloroplast light-dependent protochlorophyllide reductase mRNA, complete cds; nuclear gene for chloroplast product.


Back to taxonomic hierarchy view
Back to Phylota Browser home