Rhizaria: Cluster 242

Number of sequences (GIs)3
Number of distinct taxon IDs (TIs)3
Shortest sequence1670 nt -- Bigelowiella natans EF-1 alpha-like protein (efl) mRNA, complete cds.
Longest sequence1739 nt -- Lotharella globosa translation elongation factor 1A-like mRNA, complete cds.
Maximum alignment density1 0.984
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Bigelowiella natans 54399517 227086 1670 Bigelowiella natans EF-1 alpha-like protein (efl) mRNA, complete cds.
Lotharella globosa 193875901 91324 1739 Lotharella globosa translation elongation factor 1A-like mRNA, complete cds.
Lotharella vacuolata 193875905 74820 1724 Lotharella vacuolata translation elongation factor 1A-like cytosolic B mRNA, complete cds.


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