Rhizaria: Cluster 258

Number of sequences (GIs)4
Number of distinct taxon IDs (TIs)1
Shortest sequence494 nt -- Bigelowiella longifila strain CCMP 1486 culture-collection CCMP:1486 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Longest sequence610 nt -- Bigelowiella longifila strain CCMP 1481 culture-collection CCMP:1481 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Maximum alignment density1 0.906
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

Download sequences as...
Download tree ...


NCBI taxon name GI TI Length Defline
Bigelowiella longifila 238909357 552665 494 Bigelowiella longifila strain CCMP 1486 culture-collection CCMP:1486 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Bigelowiella longifila 238909358 552665 610 Bigelowiella longifila strain CCMP 1481 culture-collection CCMP:1481 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Bigelowiella longifila 238909377 552665 552 Bigelowiella longifila strain CCMP 1485 culture-collection CCMP:1485 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Bigelowiella longifila 238909355 552665 555 Bigelowiella longifila strain PCC 523 culture-collection PLYMOUTH:523 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.


Back to taxonomic hierarchy view
Back to Phylota Browser home