Rhizaria: Cluster 308

Number of sequences (GIs)32
Number of distinct taxon IDs (TIs)5
Shortest sequence258 nt -- Polymyxa graminis f. sp. temperata 18S ribosomal RNA gene, partial sequence.
Longest sequence887 nt -- P.graminis partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain F51.
Maximum alignment density1 0.631
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Ligniera sp. F69 4007634 70184 524 Ligniera sp. F69 5.8S rRNA gene and two internal transcribed spacers, strain F69.
Ligniera sp. F69 9885237 70184 854 Ligniera sp. (isolate F69) 5.8S rRNA gene, ITS1, ITS2 and partial 18S and 26S rRNA genes.
Polymyxa betae 14270802 41456 396 Polymyxa betae 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate A26-41.
Polymyxa betae 14270803 41456 396 Polymyxa betae 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate T17.
Polymyxa betae 4007649 41456 806 P.betae, partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain F67.
Polymyxa betae 159461720 41456 555 Polymyxa betae 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Polymyxa graminis f. sp. temperata 210162758 380679 258 Polymyxa graminis f. sp. temperata 18S ribosomal RNA gene, partial sequence.
Polymyxa graminis f. sp. temperata 94466949 380679 445 Polymyxa graminis f. sp. temperata 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Oto4.
Polymyxa graminis f. sp. temperata 94466950 380679 447 Polymyxa graminis f. sp. temperata 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Oc6.
Polymyxa graminis f. sp. temperata 94466951 380679 445 Polymyxa graminis f. sp. temperata 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Oc12.
Polymyxa graminis f. sp. temperata 94466945 380679 472 Polymyxa graminis f. sp. temperata 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), clone Cl4Oto.
Polymyxa graminis f. sp. temperata 94466946 380679 472 Polymyxa graminis f. sp. temperata 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), clone Cl6Oc.
Polymyxa graminis f. sp. tepida 94466947 380680 499 Polymyxa graminis f. sp. tepida 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), clone Cl1Fc.
Polymyxa graminis f. sp. tepida 94466954 380680 489 Polymyxa graminis f. sp. tepida 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Ff24.
Polymyxa graminis f. sp. tepida 94466953 380680 490 Polymyxa graminis f. sp. tepida 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Fc18.
Polymyxa graminis f. sp. tepida 94466952 380680 492 Polymyxa graminis f. sp. tepida 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), isolate Fc17.
Polymyxa graminis f. sp. tepida 94466948 380680 499 Polymyxa graminis f. sp. tepida 18S rRNA gene (partial), ITS1 and 5.8S rRNA gene (partial), clone Cl2Fs.
Polymyxa graminis 84618952 70182 475 Polymyxa graminis 18S rRNA gene (partial), 5.8S rRNA gene (partial) and ITS1, clone Cl3Sh.
Polymyxa graminis 14270793 70182 425 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate B1.
Polymyxa graminis 14270794 70182 425 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate C1.
Polymyxa graminis 14270795 70182 425 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate F11.
Polymyxa graminis 14270801 70182 413 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate S6.
Polymyxa graminis 14270796 70182 411 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate I1-1.
Polymyxa graminis 14270797 70182 411 Polymyxa graminis 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), isolate I1-20.
Polymyxa graminis 4007646 70182 840 P.graminis partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain F1.
Polymyxa graminis 4007647 70182 849 P.graminis partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain I1-229.
Polymyxa graminis 9885236 70182 879 Polymyxa graminis (isolate Meta) 5.8S rRNA gene, ITS1, ITS2 and partial 18S and 26S rRNA genes.
Polymyxa graminis 156119013 70182 872 Polymyxa graminis partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, isolate Afr2.
Polymyxa graminis 4007648 70182 887 P.graminis partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain F51.
Polymyxa graminis 62550773 70182 848 Polymyxa graminis 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2.
Polymyxa graminis 159461718 70182 608 Polymyxa graminis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Polymyxa graminis 159461719 70182 610 Polymyxa graminis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.


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