Rhizaria: Cluster 34

Number of sequences (GIs)3
Number of distinct taxon IDs (TIs)1
Shortest sequence296 nt -- Hastigerina pelagica isolate 0723 clone 00 small subunit ribosomal RNA gene, partial sequence.
Longest sequence311 nt -- Hastigerina pelagica isolate 0843 clone 00 small subunit ribosomal RNA gene, partial sequence.
Maximum alignment density1 0.969
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Hastigerina pelagica 225544579 69033 311 Hastigerina pelagica isolate 0843 clone 00 small subunit ribosomal RNA gene, partial sequence.
Hastigerina pelagica 225544569 69033 297 Hastigerina pelagica isolate 0722 clone 00 small subunit ribosomal RNA gene, partial sequence.
Hastigerina pelagica 225544568 69033 296 Hastigerina pelagica isolate 0723 clone 00 small subunit ribosomal RNA gene, partial sequence.


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