Rhizaria: Cluster 346

Number of sequences (GIs)4
Number of distinct taxon IDs (TIs)4
Shortest sequence524 nt -- Cercomonas parincurva strain IVY7A 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Longest sequence550 nt -- Cercomonas gigantica strain NY1 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Maximum alignment density1 0.981
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Cercomonas braziliensis 262262872 686726 535 Cercomonas braziliensis strain B13 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Cercomonas gigantica 262262868 686761 550 Cercomonas gigantica strain NY1 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Cercomonas lata 262262874 686763 549 Cercomonas lata strain C-85 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Cercomonas parincurva 262262867 686733 524 Cercomonas parincurva strain IVY7A 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.


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