Rhizaria: Cluster 35

Number of sequences (GIs)46
Number of distinct taxon IDs (TIs)8
Shortest sequence406 nt -- G.erecta gene for D1 domain of large subunit ribosomal RNA.
Longest sequence1499 nt -- G.mediterranensis gene for 28S ribosomal RNA.
Maximum alignment density1 0.451
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Angulodiscrobis quadrangularis 6525172 109235 540 Angulodiscrobis quadrangularis isolate AQ14 clone 13 large subunit ribosomal RNA gene, partial sequence.
Angulodiscrobis quadrangularis 6525171 109235 538 Angulodiscrobis quadrangularis isolate AQ13 clone 12 large subunit ribosomal RNA gene, partial sequence.
Angulodiscrobis quadrangularis 6525173 109235 626 Angulodiscrobis quadrangularis isolate AQ159 clone 2 large subunit ribosomal RNA gene, partial sequence.
Angulodiscrobis quadrangularis 6525174 109235 626 Angulodiscrobis quadrangularis isolate AQ164 clone 5 large subunit ribosomal RNA gene, partial sequence.
Glabratella elegantissima 468805 35212 421 G.elegantissima gene for D1 domain of large subunit ribosomal RNA.
Glabratella erecta 468806 35213 406 G.erecta gene for D1 domain of large subunit ribosomal RNA.
Glabratella mediterranensis 619157 37321 1499 G.mediterranensis gene for 28S ribosomal RNA.
Glabratella milletti 6525197 109230 539 Glabratella milletti isolate GM35 clone 13 large subunit ribosomal RNA gene, partial sequence.
Glabratella milletti 6525196 109230 538 Glabratella milletti isolate GM11 clone 5 large subunit ribosomal RNA gene, partial sequence.
Glabratella milletti 6525194 109230 637 Glabratella milletti isolate GM154 clone 4 large subunit ribosomal RNA gene, partial sequence.
Glabratella milletti 6525195 109230 637 Glabratella milletti isolate GM155 clone 8 large subunit ribosomal RNA gene, partial sequence.
Glabratella milletti 6525193 109230 549 Glabratella milletti isolate GM33 clone 9 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525210 109231 574 Glabratella patelliformis isolate GPJAP4 clone 2 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525203 109231 575 Glabratella patelliformis isolate GP7 clone 2 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525199 109231 576 Glabratella patelliformis isolate GP19 clone 2 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525201 109231 576 Glabratella patelliformis isolate GP19 clone 4 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525202 109231 576 Glabratella patelliformis isolate GP19 clone 5 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525204 109231 575 Glabratella patelliformis isolate GP7 clone 3 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525205 109231 575 Glabratella patelliformis isolate GP7 clone 6 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525211 109231 577 Glabratella patelliformis isolate GPJAP5 clone 3 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525198 109231 577 Glabratella patelliformis isolate GP19 clone 1 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525200 109231 576 Glabratella patelliformis isolate GP19 clone 3 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525206 109231 578 Glabratella patelliformis isolate GP7 clone 7 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525207 109231 576 Glabratella patelliformis isolate GP7 clone 11 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525208 109231 666 Glabratella patelliformis isolate GP120 clone 9 large subunit ribosomal RNA gene, partial sequence.
Glabratella patelliformis 6525209 109231 667 Glabratella patelliformis isolate GP172 clone 13 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella nakamurai 6525177 109237 650 Planoglabratella nakamurai isolate GN129 clone 14 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella nakamurai 6525212 109237 562 Planoglabratella nakamurai isolate GNJAP6 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella nakamurai 6525213 109237 562 Planoglabratella nakamurai isolate GNJAP7 clone 11 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella nakamurai 6525175 109237 566 Planoglabratella nakamurai isolate GN9 clone 7 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella nakamurai 6525176 109237 652 Planoglabratella nakamurai isolate GN106 clone 11 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525190 109238 1174 Planoglabratella opercularis isolate GO283 clone 9 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525188 109238 1171 Planoglabratella opercularis isolate GO60 clone 2 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525191 109238 1184 Planoglabratella opercularis isolate GO273 clone 6 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525189 109238 1179 Planoglabratella opercularis isolate GO41 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525192 109238 1185 Planoglabratella opercularis isolate GO253 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525181 109238 648 Planoglabratella opercularis isolate GO4 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525179 109238 650 Planoglabratella opercularis isolate GO170 clone 9 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525182 109238 561 Planoglabratella opercularis isolate GO17 clone 9 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525178 109238 653 Planoglabratella opercularis isolate GO6 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525180 109238 649 Planoglabratella opercularis isolate GO3 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525183 109238 648 Planoglabratella opercularis isolate GO37 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525184 109238 647 Planoglabratella opercularis isolate GO38 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525185 109238 646 Planoglabratella opercularis isolate GO39 clone 1 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525186 109238 647 Planoglabratella opercularis isolate GO110 clone 2 large subunit ribosomal RNA gene, partial sequence.
Planoglabratella opercularis 6525187 109238 647 Planoglabratella opercularis isolate GO111 clone 5 large subunit ribosomal RNA gene, partial sequence.


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