Rhizaria: Cluster 384

Number of sequences (GIs)4
Number of distinct taxon IDs (TIs)2
Shortest sequence1141 nt -- Thaumatomonas sp. TMT002 Hsp90 mRNA, partial cds.
Longest sequence1831 nt -- Thaumatomonas sp. (SA) heat shock protein 90 (Hsp90) gene, partial cds.
Maximum alignment density1 0.765
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

Download sequences as...
Download tree ...


NCBI taxon name GI TI Length Defline
Thaumatomonas sp. (SA) 31982985 188940 1831 Thaumatomonas sp. (SA) heat shock protein 90 (Hsp90) gene, partial cds.
Thaumatomonas sp. TMT002 116222178 407209 1315 Thaumatomonas sp. TMT002 Hsp90 mRNA, partial cds.
Thaumatomonas sp. TMT002 116222180 407209 1315 Thaumatomonas sp. TMT002 Hsp90 mRNA, partial cds.
Thaumatomonas sp. TMT002 116222176 407209 1141 Thaumatomonas sp. TMT002 Hsp90 mRNA, partial cds.


Back to taxonomic hierarchy view
Back to Phylota Browser home