Rhizaria: Cluster 47

Number of sequences (GIs)14
Number of distinct taxon IDs (TIs)9
Shortest sequence868 nt -- Paulinella chromatophora clone PC5 16S small subunit ribosomal RNA gene, partial sequence; cyanelle.
Longest sequence1439 nt -- Chlorarachnion CCMP240 16S ribosomal RNA gene, chloroplast gene for chloroplast RNA, complete sequence.
Maximum alignment density1 0.869
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Bigelowiella natans 54125576 227086 886 Bigelowiella natans strain CCMP621 16S ribosomal RNA gene, partial sequence; plastid.
Chlorarachnion reptans 710413 29199 1436 Chlorarachnion reptans chloroplast 16S small subunit rRNA gene.
Chlorarachnion sp. CCMP240 4165001 87013 1439 Chlorarachnion CCMP240 16S ribosomal RNA gene, chloroplast gene for chloroplast RNA, complete sequence.
Chlorarachnion sp. CCMP242 4165000 29201 1434 Chlorarachnion CCMP242 16S small subunit ribosomal RNA gene, chloroplast gene for chloroplast RNA, complete sequence.
Chlorarachniophyte sp. RCC365 54125618 296678 891 Chlorarachniophyte sp. RCC365 16S ribosomal RNA gene, partial sequence; plastid.
Chlorarachniophyte sp. RCC435 54125626 296743 1220 Chlorarachniophyte sp. RCC435 16S ribosomal RNA gene, partial sequence; plastid.
Gymnochlora stellata 54125594 67809 883 Gymnochlora stellata strain CCMP2057 16S ribosomal RNA gene, partial sequence; plastid.
Nonionella stella 20136732 191124 1408 Nonionella stella isolate Nschl1a 16S ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product.
Paulinella chromatophora 111378721 39717 868 Paulinella chromatophora clone PC5 16S small subunit ribosomal RNA gene, partial sequence; cyanelle.
Paulinella chromatophora 224223682 39717 1407 Paulinella chromatophora isolate Kanazawa2 small subunit ribosomal RNA gene, partial sequence; plastid.
Paulinella chromatophora 224223681 39717 1409 Paulinella chromatophora isolate Kanazawa1 small subunit ribosomal RNA gene, partial sequence; plastid.
Paulinella chromatophora 224223683 39717 1403 Paulinella chromatophora isolate Kaga small subunit ribosomal RNA gene, partial sequence; plastid.
Paulinella chromatophora 224223684 39717 1407 Paulinella chromatophora isolate Kawaguchi small subunit ribosomal RNA gene, partial sequence; plastid.
Paulinella chromatophora 224549840 39717 1410 Paulinella chromatophora strain FK01 16S ribosomal RNA gene, partial sequence; plastid.


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