Rhizaria: Cluster 77

Number of sequences (GIs)29
Number of distinct taxon IDs (TIs)28
Shortest sequence267 nt -- Psammosphaera sp. A103 partial 18S rRNA gene, isolate A103.
Longest sequence288 nt -- Psammosphaera sp. 1086 partial 18S rRNA gene, isolate 1086.
Maximum alignment density1 0.969
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Psammosphaera sp. 1019 14547188 164145 284 Psammosphaera sp. 1019 partial 18S rRNA gene, isolate 1019.
Psammosphaera sp. 1020 14547189 164146 284 Psammosphaera sp. 1020 partial 18S rRNA gene, isolate 1020.
Psammosphaera sp. 1039 14547194 164151 284 Psammosphaera sp. 1039 partial 18S rRNA gene, isolate 1039.
Psammosphaera sp. 1040 14547193 164150 284 Psammosphaera sp. 1040 partial 18S rRNA gene, isolate 1040.
Psammosphaera sp. 1086 14547206 164162 288 Psammosphaera sp. 1086 partial 18S rRNA gene, isolate 1086.
Psammosphaera sp. 1090 14547207 164163 288 Psammosphaera sp. 1090 partial 18S rRNA gene, isolate 1090.
Psammosphaera sp. A103 14547198 164155 267 Psammosphaera sp. A103 partial 18S rRNA gene, isolate A103.
Psammosphaera sp. A111 14547186 164143 284 Psammosphaera sp. A111 partial 18S rRNA gene, isolate A111.
Psammosphaera sp. A113 14547197 164154 267 Psammosphaera sp. A113 partial 18S rRNA gene, isolate A113.
Psammosphaera sp. A155 14547202 164159 288 Psammosphaera sp. A155 partial 18S rRNA gene, isolate A155.
Psammosphaera sp. A155 14547203 164159 288 Psammosphaera sp. A155 partial 18S rRNA gene, isolate A155.
Psammosphaera sp. A166 14547201 164158 267 Psammosphaera sp. A166 partial 18S rRNA gene, isolate A166.
Psammosphaera sp. A211 14547183 164140 278 Psammosphaera sp. A211 partial 18S rRNA gene, isolate A211.
Psammosphaera sp. A23 14547205 164161 288 Psammosphaera sp. A23 partial 18S rRNA gene, isolate A23.
Psammosphaera sp. A271 14547196 164153 267 Psammosphaera sp. A271 partial 18S rRNA gene, isolate A271.
Psammosphaera sp. A282 14547195 164152 267 Psammosphaera sp. A282 partial 18S rRNA gene, isolate A282.
Psammosphaera sp. A283 14547200 164157 267 Psammosphaera sp. A283 partial 18S rRNA gene, isolate A283.
Psammosphaera sp. A305 14547199 164156 267 Psammosphaera sp. A305 partial 18S rRNA gene, isolate A305.
Psammosphaera sp. A319 14547185 164142 278 Psammosphaera sp. A319 partial 18S rRNA gene, isolate A319.
Psammosphaera sp. A321 14547182 164139 278 Psammosphaera sp. A321 partial 18S rRNA gene, isolate A321.
Psammosphaera sp. A339 14547179 164136 278 Psammosphaera sp. A339 partial 18S rRNA gene, isolate A339.
Psammosphaera sp. A381 14547187 164144 284 Psammosphaera sp. A381 partial 18S rRNA gene, isolate A381.
Psammosphaera sp. A393 14547180 164137 278 Psammosphaera sp. A393 partial 18S rRNA gene, isolate A393.
Psammosphaera sp. A405 14547204 164160 288 Psammosphaera sp. A405 partial 18S rRNA gene, isolate A405.
Psammosphaera sp. A406 14547184 164141 274 Psammosphaera sp. A406 partial 18S rRNA gene, isolate A406.
Psammosphaera sp. A49 14547181 164138 278 Psammosphaera sp. A49 partial 18S rRNA gene, isolate A49.
Psammosphaera sp. A55 14547191 164148 284 Psammosphaera sp. A55 partial 18S rRNA gene, isolate A55.
Psammosphaera sp. A56 14547190 164147 284 Psammosphaera sp. A56 partial 18S rRNA gene, isolate A56.
Psammosphaera sp. A57 14547192 164149 284 Psammosphaera sp. A57 partial 18S rRNA gene, isolate A57.


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