Jakobida: Cluster 1

Number of sequences (GIs)9
Number of distinct taxon IDs (TIs)6
Shortest sequence1752 nt -- Andalucia godoyi isolate AND19 18S ribosomal RNA gene, partial sequence.
Longest sequence1863 nt -- Reclinomonas americana small subunit ribosomal RNA gene, complete sequence.
Maximum alignment density1 0.978
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Andalucia godoyi 65306222 505711 1752 Andalucia godoyi isolate AND19 18S ribosomal RNA gene, partial sequence.
Andalucia godoyi 65306227 505711 1850 Andalucia godoyi isolate AND28 18S ribosomal RNA gene, partial sequence.
Andalucia incarcerata 168830560 444705 1785 Andalucia incarcerata isolate MB1 small subunit ribosomal RNA gene, partial sequence.
Jakoba libera 23344745 143017 1844 Jakoba libera small subunit ribosomal RNA gene, complete sequence.
Jakoba libera 33309662 143017 1838 Jakoba libera 18S ribosomal RNA gene, complete sequence.
Reclinomonas americana 23344744 48483 1863 Reclinomonas americana small subunit ribosomal RNA gene, complete sequence.
Reclinomonas americana 6650089 48483 1843 Reclinomonas americana 18S ribosomal RNA gene, partial sequence.
Seculamonas ecuadoriensis 75756145 221724 1842 Seculamonas ecuadoriensis 18S ribosomal RNA gene, complete sequence.
Soil flagellate AND18 65306221 529679 1787 Soil flagellate AND18 18S ribosomal RNA gene, partial sequence.


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