Jakobida: Cluster 13

Number of sequences (GIs)7
Number of distinct taxon IDs (TIs)5
Shortest sequence1249 nt -- Reclinomonas americana clone 2 translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.
Longest sequence1860 nt -- Seculamonas ecuadoriensis elongation factor 1 alpha mRNA, complete cds.
Maximum alignment density1 0.827
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Histiona aroides 226347400 392300 1487 Histiona aroides elongation factor 1 alpha mRNA, complete cds.
Jakoba bahamiensis 226347402 221721 1586 Jakoba bahamiensis elongation factor 1 alpha mRNA, complete cds.
Jakoba libera 226347404 143017 1673 Jakoba libera elongation factor 1 alpha mRNA, complete cds.
Reclinomonas americana 226347410 48483 1647 Reclinomonas americana elongation factor 1 alpha mRNA, complete cds.
Reclinomonas americana 84105360 48483 1249 Reclinomonas americana clone 2 translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.
Reclinomonas americana 84105358 48483 1261 Reclinomonas americana clone 1 translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.
Seculamonas ecuadoriensis 226347412 221724 1860 Seculamonas ecuadoriensis elongation factor 1 alpha mRNA, complete cds.


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