Jakobida: Cluster 2

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)4
Shortest sequence1153 nt -- Andalucia godoyi isolate AND28 clone C2 alpha-tubulin gene, partial cds.
Longest sequence1237 nt -- Reclinomonas americana alpha-tubulin gene, partial cds.
Maximum alignment density1 0.949
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Andalucia godoyi 168830534 505711 1153 Andalucia godoyi isolate AND28 clone C2 alpha-tubulin gene, partial cds.
Andalucia godoyi 168830536 505711 1153 Andalucia godoyi isolate AND28 clone C9 alpha-tubulin gene, partial cds.
Andalucia incarcerata 168830550 444705 1171 Andalucia incarcerata isolate MB1 alpha-tubulin gene, partial cds.
Jakoba libera 13491134 143017 1153 Jakoba libera alpha-tubulin gene, partial cds.
Reclinomonas americana 13649510 48483 1237 Reclinomonas americana alpha-tubulin gene, partial cds.


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