Jakobida: Cluster 3

Number of sequences (GIs)7
Number of distinct taxon IDs (TIs)4
Shortest sequence1162 nt -- Andalucia godoyi isolate AND28 beta-tubulin gene, partial cds.
Longest sequence1319 nt -- Jakoba libera clone 3 beta-tubulin gene, partial cds.
Maximum alignment density1 0.930
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Andalucia godoyi 168830538 505711 1162 Andalucia godoyi isolate AND28 beta-tubulin gene, partial cds.
Andalucia incarcerata 168830552 444705 1162 Andalucia incarcerata isolate MB1 beta-tubulin gene, partial cds.
Jakoba libera 13649521 143017 1319 Jakoba libera clone 3 beta-tubulin gene, partial cds.
Reclinomonas americana 13649540 48483 1240 Reclinomonas americana clone 18 beta-tubulin gene, partial cds.
Reclinomonas americana 13649532 48483 1232 Reclinomonas americana clone 14 beta-tubulin gene, partial cds.
Reclinomonas americana 13649545 48483 1232 Reclinomonas americana clone 22 beta-tubulin gene, partial cds.
Reclinomonas americana 13649530 48483 1237 Reclinomonas americana clone 12 beta-tubulin gene, partial cds.


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