Parabasalidea: Cluster 165

Number of sequences (GIs)6
Number of distinct taxon IDs (TIs)5
Shortest sequence1465 nt -- Trichonympha acuta gene for small subunit rRNA, partial sequence.
Longest sequence1485 nt -- Trichonympha acuta small subunit ribosomal RNA gene, partial sequence.
Maximum alignment density1 0.996
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Trichonympha acuta 218117464 544393 1465 Trichonympha acuta gene for small subunit rRNA, partial sequence.
Trichonympha acuta 283135467 544393 1485 Trichonympha acuta small subunit ribosomal RNA gene, partial sequence.
Trichonympha lata 283135468 703601 1481 Trichonympha lata small subunit ribosomal RNA gene, partial sequence.
Trichonympha sp. 1 PJK-2009 283135469 703602 1476 Trichonympha sp. 1 PJK-2009 small subunit ribosomal RNA gene, partial sequence.
Trichonympha sp. CpuTcA 219686323 521174 1485 Trichonympha sp. CpuTcA gene for small subunit ribosomal RNA, partial sequence.
Trichonympha sp. CpuTcB 219686324 521175 1481 Trichonympha sp. CpuTcB gene for small subunit ribosomal RNA, partial sequence.


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