Parabasalidea: Cluster 9

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)5
Shortest sequence59 nt -- Hypotrichomonas acosta 28S ribosomal RNA.
Longest sequence61 nt -- Monocercomonas sp. 28S ribosomal RNA.
Maximum alignment density1 0.990
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Hypotrichomonas acosta 9389 5735 59 Hypotrichomonas acosta 28S ribosomal RNA.
Monocercomonas sp. 9711 5737 61 Monocercomonas sp. 28S ribosomal RNA.
Tetratrichomonas gallinarum 10708 5730 60 Tetratrichomonas gallinarum 28S ribosomal RNA.
Trichomitus batrachorum 10375 5732 61 Trichomitus batrachorum 28S ribosomal RNA.
Tritrichomonas augusta 10365 5725 61 Tritrichomonas augusta 28S ribosomal RNA.


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