Parabasalidea: Cluster 99

Number of sequences (GIs)25
Number of distinct taxon IDs (TIs)7
Shortest sequence299 nt -- Tritrichomonas augusta strain 104 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Longest sequence507 nt -- Tritrichomonas sp. AUTf isolate AUTf-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Maximum alignment density1 0.719
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Tritrichomonas augusta 38202359 5725 299 Tritrichomonas augusta strain 104 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Tritrichomonas augusta 37962265 5725 325 Tritrichomonas augusta small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas augusta 37962247 5725 325 Tritrichomonas augusta strain DALM small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas augusta 37962248 5725 325 Tritrichomonas augusta strain HYLA small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas mobilensis 62870357 56778 329 Tritrichomonas mobilensis isolate TANA 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas mobilensis 4099368 56778 372 Tritrichomonas mobilensis putative rRNA small subunit gene, partial sequence, putative internal transcribed spacer 1, putative 5.8S rRNA gene, and putative internal transcribed spacer 2, complete sequence, and putative rRNA large subunit gene, partial sequence.
Tritrichomonas muris 62870358 5726 336 Tritrichomonas muris isolate MURIS1 clone 1-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas muris 62870359 5726 336 Tritrichomonas muris isolate MURIS1 clone 1-8 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas nonconforma 37962267 174567 344 Tritrichomonas nonconforma strain R114 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas nonconforma 37962266 174567 344 Tritrichomonas nonconforma strain ABI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989456 517132 507 Tritrichomonas sp. AUTf isolate AUTf-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989453 517132 395 Tritrichomonas sp. AUTf isolate AUTf-2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989458 517132 333 Tritrichomonas sp. AUTf isolate AUTf-7 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989459 517132 403 Tritrichomonas sp. AUTf isolate AUTf-9 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989463 517132 331 Tritrichomonas sp. AUTf isolate AUTf-13 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989462 517132 336 Tritrichomonas sp. AUTf isolate AUTf-12 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989455 517132 481 Tritrichomonas sp. AUTf isolate AUTf-4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989452 517132 398 Tritrichomonas sp. AUTf isolate AUTf-1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989454 517132 403 Tritrichomonas sp. AUTf isolate AUTf-3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989457 517132 406 Tritrichomonas sp. AUTf isolate AUTf-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989461 517132 337 Tritrichomonas sp. AUTf isolate AUTf-11 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. AUTf 182989460 517132 441 Tritrichomonas sp. AUTf isolate AUTf-10 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Tritrichomonas sp. LV2 37962268 234609 338 Tritrichomonas sp. LV2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
Tritrichomonas suis 38202358 56690 302 Tritrichomonas suis strain TSM internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
Tritrichomonas suis 4099315 56690 372 Tritrichomonas suis putative rRNA small subunit gene, partial sequence, putative internal transcribed spacer 1, putative 5.8S rRNA gene, and putative internal transcribed spacer 2, complete sequence, and putative rRNA large subunit gene, partial sequence.


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