Plasmodium vinckei: Cluster 1 (up to parent cluster)

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)5
Shortest sequence937 nt -- Plasmodium vinckei lentum strain 408XZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Longest sequence1005 nt -- Plasmodium vinckei vinckei strain VIBA Cy Pl cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Maximum alignment density1 0.973
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium vinckei brucechwatti 91982885 119398 963 Plasmodium vinckei brucechwatti cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 91982889 138297 937 Plasmodium vinckei lentum strain 408XZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 91982887 138297 999 Plasmodium vinckei lentum strain 194ZZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 91982893 138298 954 Plasmodium vinckei petteri strain CR cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 91982891 138298 973 Plasmodium vinckei petteri strain BS cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei vinckei 91982883 54757 1005 Plasmodium vinckei vinckei strain VIBA Cy Pl cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei 91982881 5860 1004 Plasmodium vinckei strain EL cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
Plasmodium vinckei 166361760 5860 985 Plasmodium vinckei strain R8 cytochrome oxidase subunit I (coI) gene, partial cds; mitochondrial.


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