Plasmodium vinckei: Cluster 11 (up to parent cluster)

Number of sequences (GIs)5
Number of distinct taxon IDs (TIs)5
Shortest sequence1272 nt -- Plasmodium vinckei brucechwatti from Nigeria, circumsporozoite protein (CS) gene, partial cds.
Longest sequence1395 nt -- Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
Maximum alignment density1 0.945
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium vinckei brucechwatti 17221670 119398 1272 Plasmodium vinckei brucechwatti from Nigeria, circumsporozoite protein (CS) gene, partial cds.
Plasmodium vinckei lentum 17221664 138297 1395 Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
Plasmodium vinckei petteri 17221666 138298 1329 Plasmodium vinckei petteri circumsporozoite protein (CS) gene, complete cds.
Plasmodium vinckei vinckei 17221668 54757 1278 Plasmodium vinckei vinckei circumsporozoite protein (CS) gene, complete cds.
Plasmodium vinckei 17221672 5860 1316 Plasmodium vinckei circumsporozoite protein (CS) gene, partial cds.


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