Plasmodium vinckei: Cluster 14 (up to parent cluster)

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)5
Shortest sequence996 nt -- Plasmodium vinckei clone VIBA CyO cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.
Longest sequence1035 nt -- Plasmodium vinckei lentum strain 194ZZ cytochrome b (cytb) gene, partial cds; mitochondrial.
Maximum alignment density1 0.990
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium vinckei brucechwatti 90186557 119398 1009 Plasmodium vinckei brucechwatti cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 90186559 138297 1035 Plasmodium vinckei lentum strain 194ZZ cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei lentum 90186561 138297 1020 Plasmodium vinckei lentum strain 408XZ cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 90186565 138298 1035 Plasmodium vinckei petteri strain CR cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei petteri 90186563 138298 1035 Plasmodium vinckei petteri strain BS cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei vinckei 90186555 54757 1035 Plasmodium vinckei vinckei strain VIBA Cy Pl cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei 90186553 5860 1035 Plasmodium vinckei strain EL cytochrome b (cytb) gene, partial cds; mitochondrial.
Plasmodium vinckei 22651641 5860 996 Plasmodium vinckei clone VIBA CyO cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.


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