Plasmodium vinckei: Cluster 2 (up to parent cluster)

Number of sequences (GIs)8
Number of distinct taxon IDs (TIs)5
Shortest sequence499 nt -- Plasmodium vinckei strain R8 caseinolytic protease C (clpc) gene, partial cds; apicoplast.
Longest sequence530 nt -- Plasmodium vinckei vinckei isolate VIBA Cy Pl caseinolytic protease C gene, partial cds; apicoplast.
Maximum alignment density1 0.963
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Plasmodium vinckei brucechwatti 89574295 119398 500 Plasmodium vinckei brucechwatti caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei lentum 89574297 138297 501 Plasmodium vinckei lentum isolate 194ZZ caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei lentum 89574299 138297 512 Plasmodium vinckei lentum isolate 408XZ caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei petteri 89574303 138298 520 Plasmodium vinckei petteri isolate CR caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei petteri 89574301 138298 522 Plasmodium vinckei petteri isolate BS caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei vinckei 89574293 54757 530 Plasmodium vinckei vinckei isolate VIBA Cy Pl caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei 89574291 5860 501 Plasmodium vinckei isolate EL caseinolytic protease C gene, partial cds; apicoplast.
Plasmodium vinckei 169136001 5860 499 Plasmodium vinckei strain R8 caseinolytic protease C (clpc) gene, partial cds; apicoplast.


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