Oxymonadida: Cluster 1

Number of sequences (GIs)41
Number of distinct taxon IDs (TIs)18
Shortest sequence1886 nt -- Dinenympha sp. AB-2002 18S ribosomal RNA gene, partial sequence.
Longest sequence2158 nt -- Oxymonas sp. NcOxA gene for small subunit ribosomal RNA, partial sequence.
Maximum alignment density1 0.936
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Dinenympha exilis 29565526 66290 2061 Dinenympha exilis gene for small subunit ribosomal RNA, partial sequence, clone:PgA.
Dinenympha exilis 29565524 66290 2062 Dinenympha exilis gene for small subunit ribosomal RNA, partial sequence, clone:M.
Dinenympha fimbriata 33413756 208475 1913 Dinenympha fimbriata 18S ribosomal RNA gene, partial sequence.
Dinenympha gracilis 33413757 208476 1930 Dinenympha gracilis 18S ribosomal RNA gene, partial sequence.
Dinenympha parva 29565525 210203 2057 Dinenympha parva gene for small subunit ribosomal RNA, partial sequence, clone:T.
Dinenympha sp. AB-2002 33413755 208478 1886 Dinenympha sp. AB-2002 18S ribosomal RNA gene, partial sequence.
Dinenympha sp. HsDnA 157908480 450812 2013 Dinenympha sp. HsDnA gene for small subunit ribosomal RNA, partial sequence.
Dinenympha sp. HsDnA2 157908481 450813 2014 Dinenympha sp. HsDnA2 gene for small subunit ribosomal RNA, partial sequence.
Oxymonas sp. NcOxA 157908487 450818 2158 Oxymonas sp. NcOxA gene for small subunit ribosomal RNA, partial sequence.
Pyrsonympha grandis 29565518 97342 2077 Pyrsonympha grandis gene for small subunit ribosomal RNA, partial sequence, clone:AB.
Pyrsonympha grandis 29565520 97342 2067 Pyrsonympha grandis gene for small subunit ribosomal RNA, partial sequence, clone:PgB.
Pyrsonympha grandis 29565519 97342 2088 Pyrsonympha grandis gene for small subunit ribosomal RNA, partial sequence, clone:PgA.
Pyrsonympha grandis 29565542 97342 2088 Pyrsonympha grandis gene for small subunit ribosomal RNA, partial sequence, clone:0485.
Pyrsonympha sp. AB-2002 33413758 208477 1939 Pyrsonympha sp. AB-2002 18S ribosomal RNA gene, partial sequence.
Pyrsonympha sp. JBD2000 14348579 137417 2012 Pyrsonympha sp. JBD2000 small subunit ribosomal RNA gene, complete sequence.
Saccinobaculus ambloaxostylus 106013348 388028 2008 Saccinobaculus ambloaxostylus clone E08 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013345 388028 2008 Saccinobaculus ambloaxostylus clone E05 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013346 388028 2008 Saccinobaculus ambloaxostylus clone E06 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013347 388028 2008 Saccinobaculus ambloaxostylus clone E07 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013344 388028 2009 Saccinobaculus ambloaxostylus clone E04 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013362 388028 2056 Saccinobaculus ambloaxostylus clone I5a small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013358 388028 2056 Saccinobaculus ambloaxostylus clone I3a small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013365 388028 2057 Saccinobaculus ambloaxostylus clone I6b small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013359 388028 2056 Saccinobaculus ambloaxostylus clone I3b small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013363 388028 2057 Saccinobaculus ambloaxostylus clone I5b small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013364 388028 2057 Saccinobaculus ambloaxostylus clone I6a small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013356 388028 2057 Saccinobaculus ambloaxostylus clone I2a small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013357 388028 2058 Saccinobaculus ambloaxostylus clone I2b small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013360 388028 2056 Saccinobaculus ambloaxostylus clone I4a small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013361 388028 2056 Saccinobaculus ambloaxostylus clone I4b small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus ambloaxostylus 106013366 388028 2057 Saccinobaculus ambloaxostylus clone I6c small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus doroaxostylus 106013353 388029 1943 Saccinobaculus doroaxostylus clone E13 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus doroaxostylus 106013351 388029 1937 Saccinobaculus doroaxostylus clone E11 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus doroaxostylus 106013354 388029 1941 Saccinobaculus doroaxostylus clone E14 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus doroaxostylus 106013352 388029 1942 Saccinobaculus doroaxostylus clone E12 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus doroaxostylus 106013355 388029 2007 Saccinobaculus doroaxostylus clone I1 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus sp. E01 106013341 388033 1998 Saccinobaculus sp. E01 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus sp. E02 106013342 388034 2037 Saccinobaculus sp. E02 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus sp. E03 106013343 388035 2083 Saccinobaculus sp. E03 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus sp. E09 106013349 388036 1986 Saccinobaculus sp. E09 small subunit ribosomal RNA gene, partial sequence.
Saccinobaculus sp. E10 106013350 388037 1953 Saccinobaculus sp. E10 small subunit ribosomal RNA gene, partial sequence.


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