Oxymonadida: Cluster 4

Number of sequences (GIs)25
Number of distinct taxon IDs (TIs)6
Shortest sequence897 nt -- Streblomastix strix clone 3 alpha-tubulin mRNA, partial cds.
Longest sequence1634 nt -- Monocercomonoides sp. PA clone 4/4 tubulin alpha subunit mRNA, complete cds.
Maximum alignment density1 0.715
Paralogous sequences present?2-
  1The fraction of non-missing nucleotides in an ideal alignment if no gaps had to be introduced. Low values indicate that cluster sequences are heterogeneous in length, with possibly only local homologies (for example, if one sequence is a complete mitochondrial genome, and others are single mt genes).
  2Assayed via a phylogenetic test of orthology (Sanderson et al., 2003), which checks whether a tree forcing all sequences from the same species to be a clade is significantly worse than one allowing them to be phylogenetically dispersed. If so, this is presumptive evidence of paralogy, lineage sorting, mistaken identification, or other causes of such incongruence.

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NCBI taxon name GI TI Length Defline
Dinenympha exilis 7532989 66290 1124 Dinenympha exilis clone 2 alpha tubulin mRNA, partial cds.
Dinenympha exilis 7532987 66290 1124 Dinenympha exilis clone 1 alpha tubulin mRNA, partial cds.
Monocercomonoides sp. PA 156708125 302782 1583 Monocercomonoides sp. PA clone 1/4 tubulin alpha subunit mRNA, complete cds.
Monocercomonoides sp. PA 156708127 302782 1598 Monocercomonoides sp. PA clone 2/4 tubulin alpha subunit mRNA, complete cds.
Monocercomonoides sp. PA 156708131 302782 1634 Monocercomonoides sp. PA clone 4/4 tubulin alpha subunit mRNA, complete cds.
Monocercomonoides sp. PA 156708129 302782 1633 Monocercomonoides sp. PA clone 3/4 tubulin alpha subunit mRNA, complete cds.
Monocercomonoides sp. PA203 56684115 453998 1101 Monocercomonoides sp. PA203 tubulin alpha subunit gene, partial cds.
Monocercomonoides sp. PA203 56684117 453998 1101 Monocercomonoides sp. PA203 tubulin alpha subunit gene, partial cds.
Monocercomonoides sp. PA203 56684113 453998 1101 Monocercomonoides sp. PA203 tubulin alpha subunit gene, partial cds.
Monocercomonoides sp. PA203 56684131 453998 1101 Monocercomonoides sp. PA203 tubulin alpha subunit gene, partial cds.
Monocercomonoides sp. PA203 56684111 453998 1101 Monocercomonoides sp. PA203 tubulin alpha subunit gene, partial cds.
Pyrsonympha grandis 7532991 97342 1127 Pyrsonympha grandis clone 1 alpha tubulin mRNA, partial cds.
Pyrsonympha grandis 7532993 97342 1127 Pyrsonympha grandis clone 2 alpha tubulin mRNA, partial cds.
Saccinobaculus ambloaxostylus 119117168 388028 1153 Saccinobaculus ambloaxostylus clone 1 alpha-tubulin (Atub) gene, partial cds.
Saccinobaculus ambloaxostylus 119117166 388028 1153 Saccinobaculus ambloaxostylus clone 7 alpha-tubulin (Atub) gene, partial cds.
Saccinobaculus ambloaxostylus 119117170 388028 1153 Saccinobaculus ambloaxostylus clone 3 alpha-tubulin (Atub) gene, partial cds.
Streblomastix strix 28783974 222440 912 Streblomastix strix clone 4 alpha-tubulin mRNA, partial cds.
Streblomastix strix 28783976 222440 899 Streblomastix strix clone 5 alpha-tubulin mRNA, partial cds.
Streblomastix strix 28783767 222440 897 Streblomastix strix clone 3 alpha-tubulin mRNA, partial cds.
Streblomastix strix 28783243 222440 900 Streblomastix strix clone 2 alpha-tubulin mRNA, partial cds.
Streblomastix strix 28782599 222440 900 Streblomastix strix clone 1 alpha-tubulin mRNA, partial cds.
Streblomastix strix 28779300 222440 1153 Streblomastix strix clone 1 alpha-tubulin gene, partial cds.
Streblomastix strix 28779302 222440 1153 Streblomastix strix clone 2 alpha-tubulin gene, partial cds.
Streblomastix strix 28779304 222440 1153 Streblomastix strix clone 3 alpha-tubulin gene, partial cds.
Streblomastix strix 86451921 222440 1335 Streblomastix strix alpha tubulin (Atub) gene, partial cds.


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