Cluster set at subtree whose root is 'Mesozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-1117001700 1.000- 0.000Dicyema misakiense mitochondrial COXI gene for cytochrome c oxidase subunit I, complete sequence.-
1-1115991599 1.000- 0.000Dicyema misakiense mitochondrial COXII gene for cytochrome c oxidase subunit II, complete sequence.-
2-1116971697 1.000- 0.000Dicyema misakiense mitochondrial COXIII gene for cytochrome c oxidase subunit III, complete sequence.-
3-1112461246 1.000- 0.000Dicyema misakiense mitochondrial DNA for large subunit ribosomal RNA, partial sequence.-
4-11852852 1.000- 0.000Dicyema misakiense mitochondrial gene for NADH dehydrogenase subunit I, complete cds.-
5-11778778 1.000- 0.000Dicyema misakiense mitochondrial gene for NADH dehydrogenase subunit II, complete cds.-
6-11116116 1.000- 0.000Dicyema misakiense (Mesozoa) 5S rRNA.-
7-1218531861 0.998- 0.000R.ophiocomae 18S rRNA gene.-
8-3315131663 0.952- 0.000Dicyema sp. 18S rRNA gene.-
9-1116251625 1.000- 0.000Dicyema acuticephalum gene for 18S ribosomal RNA, partial sequence.-
10-129991040 0.980- 0.000Dicyema acuticephalum gene for actin, complete cds.-
11-1210861220 0.945- 0.000Dicyema acuticephalum gene for fructose-bisphosphate aldolase, complete cds.-
12-1212451245 1.000- 0.000Dicyema acuticephalum mRNA for ATP synthase beta subunit, complete cds.-
13-1212271406 0.936- 0.000Dicyema acuticephalum gene for Pax6, complete cds.-
14-1410231051 0.986- 0.000Dicyema acuticephalum gene for Zic family member ZicA, complete cds.-
15-2311311270 0.927- 0.000Dicyema japonicum gene for actin, complete cds.-
16-1115041504 1.000- 0.000Dicyema orientale mRNA for DoxC, complete cds.-
17-1113341334 1.000- 0.000Dicyema orientale otx mRNA for orthodenticle, partial cds.-
18-11504504 1.000- 0.000Dicyema orientale mRNA for T-box protein, partial cds.-
19-11390390 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-03.-
20-11314314 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-1/05.-
21-11364364 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-2/05.-
22-11390390 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-10.-
23-11503503 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-11.-
24-11389389 1.000- 0.000Dicyema sp. Ov-NT1 DNA, clone: Dc-08.-
25-19168175 0.992- 0.000Dicyema sp. Ov-NT1 DNA, repeat sequence RS/HDIII-6.-
26-2212171220 0.999- 0.000Dicyema sp. NT-ov1 BTdv1 gene for beta-tubulin, partial cds.-
27-2413101530 0.916- 0.000Dicyema japonicum gene for beta-tubulin, complete cds.-
28-1213961441 0.984- 0.000Dicyema japonicum mRNA for alpha-tubulin, complete cds.-
29-1212861324 0.986- 0.000Dicyema japonicum gene for tektin B, exon 1-5, complete cds.-
30-1213441423 0.972- 0.000Dicyema japonicum gene for tektin C, exon 1-7, complete cds.-
31-1212701476 0.930- 0.000Dicyema japonicum clp1 gene for chitinase like protein1, complete cds.-
32-1115111511 1.000- 0.000Dicyema japonicum vcp gene for valosin-containing protein, partial cds.-
33-11874874 1.000- 0.000Dicyema japonicum uck gene for uridine-cytidine kinase, complete cds.-
34-1112281228 1.000- 0.000Dicyema japonicum suclg1 gene for succinate-CoA ligase GDP forming alpha subunit, complete cds.-
35-1113151315 1.000- 0.000Dicyema japonicum gene for hypothetical protein, complete cds.-
36-1110981098 1.000- 0.000Dicyema japonicum slc35b1 gene for solute carrier family 35 member B1, complete cds.-
37-1111121112 1.000- 0.000Dicyema japonicum shmt gene for serine hydroxymethyltransferase, partial cds.-
38-1110711071 1.000- 0.000Dicyema japonicum gene for hypothetical protein, complete cds.-
39-11981981 1.000- 0.000Dicyema japonicum rpl8 gene for 60S ribosomal protein L8, complete cds.-
40-1111811181 1.000- 0.000Dicyema japonicum rpl4 gene for ribosomal protein L4, complete cds.-
41-1111921192 1.000- 0.000Dicyema japonicum rrm2 gene for ribonucleoside-diphosphate reductase subunit M2, complete cds.-
42-11927927 1.000- 0.000Dicyema japonicum rpa2 gene for replication protein A 32 kDa subunit, complete cds.-
43-1111951195 1.000- 0.000Dicyema japonicum qk gene for quaking protein, complete cds.-
44-11902902 1.000- 0.000Dicyema japonicum psmc3 gene for 26S proteasome subunit ATPase 3, partial cds.-
45-1110411041 1.000- 0.000Dicyema japonicum np gene for nucleoside phosphorylase, complete cds.-
46-1111781178 1.000- 0.000Dicyema japonicum mdh gene for malate dehydrogenase, complete cds.-
47-1113271327 1.000- 0.000Dicyema japonicum idh3a gene for isocitrate dehydrogenase [NAD] subunit alpha, complete cds.-
48-1119501950 1.000- 0.000Dicyema japonicum Hsp60 gene for 60 kDa heat shock protein, complete cds.-
49-1112061206 1.000- 0.000Dicyema japonicum gene for sodium- and chloride-dependent glycine transporter, partial cds.-
50-1113961396 1.000- 0.000Dicyema japonicum GAPDH gene for glyceraldehyde-3-phosphate dehydrogenase, complete cds.-
51-1110931093 1.000- 0.000Dicyema japonicum gene for glucose transporter, partial cds.-
52-1112601260 1.000- 0.000Dicyema japonicum gale gene for UDP-glucose 4-epimerase, complete cds.-
53-1115331533 1.000- 0.000Dicyema japonicum gene for FERM domain containing protein, complete cds.-
54-1116081608 1.000- 0.000Dicyema japonicum ef1a gene for elongation factor 1-alpha, complete cds.-
55-1115761576 1.000- 0.000Dicyema japonicum gene for DEAD box ATP-dependent RNA helicase, complete cds.-
56-1114431443 1.000- 0.000Dicyema japonicum gene for aspartate aminotransferase, complete cds.-
57-1111021102 1.000- 0.000Dicyema japonicum gene for NAD kinase, partial cds.-
58-1112571257 1.000- 0.000Dicyema japonicum gene for branched chain ketoacid dehydrogenase, complete cds.-
59-1117051705 1.000- 0.000Dicyema japonicum gene for bromodomain containing protein, complete cds.-
60-1111741174 1.000- 0.000Dicyema japonicum gene for calcium binding protein, complete cds.-
61-1111751175 1.000- 0.000Dicyema japonicum gene for cyclin dependent kinase, complete cds.-
62-11983983 1.000- 0.000Dicyema japonicum gene for hypothetical protein, complete cds.-
63-11876876 1.000- 0.000Dicyema japonicum gene for aquaglyceroporin, complete cds.-
64-1110611061 1.000- 0.000Dicyema japonicum Capzb gene for F-actin capping protein beta, complete cds.-
65-11863863 1.000- 0.000Dicyema japonicum gene for 14-3-3 protein, complete cds.-
66-1112721272 1.000- 0.000Dicyema japonicum premature mRNA, similar to innexin1.-
67-1112631263 1.000- 0.000Dicyema koshidai inx1 mRNA for innexin1, complete cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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