Cluster set at subtree whose root is 'Placozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-2210551055 1.000- 0.000Trichoplax adhaerens dicer-like protein A mRNA, partial cds.-
1-2210741074 1.000- 0.000Trichoplax adhaerens dicer-like protein B mRNA, partial cds.-
2-2210601077 0.992- 0.000Trichoplax adhaerens dicer-like protein C mRNA, partial cds.-
3-2210561056 1.000- 0.000Trichoplax adhaerens dicer-like protein D mRNA, partial cds.-
4-2210781078 1.000- 0.000Trichoplax adhaerens dicer-like protein E mRNA, partial cds.-
5-7712021787 0.944- 0.000Trichoplax sp. 18S rRNA gene.
6-948662913 0.774- 0.000Trichoplax adhaerens 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
7-11370370 1.000- 0.000T. adhaerens 5' end of 28S ribosomal RNA.-
8-11116116 1.000- 0.000T.adhaerens 5S rRNA.-
9-139631272 0.869- 0.000Trichoplax adhaerens Trox-2 homeobox transcription factor mRNA, complete cds.-
10-1117841784 1.000- 0.000Trichoplax adhaerens mRNA for Brachyury protein.-
11-1124402440 1.000- 0.000Trichoplax adhaerens mRNA for Tbx2/3 protein.-
12-11737737 1.000- 0.000Trichoplax adhaerens mRNA for Secp1 protein precursor.-
13-1113521352 1.000- 0.000Trichoplax adhaerens mRNA for actin (actin gene).-
14-1116321632 1.000- 0.000Trichoplax adhaerens mRNA for elongation factor 1 alpha (ef1a gene).-
15-11813813 1.000- 0.000Trichoplax adhaerens mRNA for metallothionein (mt gene).-
16-11466466 1.000- 0.000Trichoplax adhaerens mRNA for mitochondrial ribosomal protein S25 (mrps25 gene).-
17-11181181 1.000- 0.000Trichoplax adhaerens putative beta-actin gene, partial cds.-
18-7779241933 0.350- 0.000Trichoplax adhaerens 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
19-6729463198 0.983- 0.000Trichoplax sp. H7 28S ribosomal RNA gene, partial sequence.
20-1117541754 1.000- 0.000Trichoplax adhaerens Not homeobox transcription factor mRNA, complete cds.-
21-11955955 1.000- 0.000Trichoplax adhaerens PaxB mRNA, partial cds.-
22-11954954 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Dlx) mRNA, complete cds.-
23-111997319973 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Dlx) gene, complete cds.-
24-11457457 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Hmx) mRNA, partial cds.-
25-111172811728 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Hmx) gene, complete cds.-
26-11762762 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Mnx) mRNA, partial cds.-
27-111858818588 1.000- 0.000Trichoplax adhaerens ANTP homeobox protein (Mnx) gene, complete cds.-
28-1118741874 1.000- 0.000Trichoplax adhaerens RNA polymerase II largest subunit mRNA, partial cds.-
29-227591344 0.782- 0.000Trichoplax adhaerens beta-tubulin mRNA, complete cds.-
30-11762762 1.000- 0.000Trichoplax adhaerens prolylcarboxypeptidase mRNA, partial cds.-
31-22303372 0.907- 0.000Placozoa sp. H2 eukaryotic translation initiation factor 2 gamma mRNA, partial cds.-
32-11576576 1.000- 0.000Trichoplax adhaerens DNA-directed RNA polymerase III polypeptide B mRNA, partial cds.-
33-22258300 0.930- 0.000Placozoa sp. H2 ribosomal protein S2 mRNA, partial cds.-
34-11384384 1.000- 0.000Trichoplax adhaerens GTP-binding nuclear protein RAN mRNA, partial cds.-
35-22561576 0.987- 0.000Placozoa sp. H2 Na+/K+-ATPase alpha-subunit mRNA, partial cds.-
36-1110141014 1.000- 0.000Trichoplax adhaerens heat shock 70kDa protein 9 mRNA, partial cds.-
37-1115481548 1.000- 0.000Trichoplax adhaerens heat shock 70kDa protein 8 mRNA, partial cds.-
38-22252408 0.809- 0.000Placozoa sp. H2 cell division control protein 42 mRNA, partial cds.-
39-11243243 1.000- 0.000Trichoplax adhaerens Hnf1 mRNA, partial cds.-
40-11138138 1.000- 0.000Trichoplax adhaerens POU4 mRNA, partial cds.-
41-11180180 1.000- 0.000Trichoplax adhaerens POU3 mRNA, partial cds.-
42-11189189 1.000- 0.000Trichoplax adhaerens PBX/PBC mRNA, partial cds.-
43-11189189 1.000- 0.000Trichoplax adhaerens Pknox mRNA, partial cds.-
44-11189189 1.000- 0.000Trichoplax adhaerens Irx mRNA, partial cds.-
45-11189189 1.000- 0.000Trichoplax adhaerens Meis mRNA, partial cds.-
46-11180180 1.000- 0.000Trichoplax adhaerens Lim2/9 mRNA, partial cds.-
47-11180180 1.000- 0.000Trichoplax adhaerens Lim1/5 mRNA, partial cds.-
48-11180180 1.000- 0.000Trichoplax adhaerens Lim/Isl mRNA, partial cds.-
49-11180180 1.000- 0.000Trichoplax adhaerens Six3/6 mRNA, partial cds.-
50-11180180 1.000- 0.000Trichoplax adhaerens Six1/2 mRNA, partial cds.-
51-11180180 1.000- 0.000Trichoplax adhaerens Pax3-like protein mRNA, partial cds.-
52-11180180 1.000- 0.000Trichoplax adhaerens Otp mRNA, partial cds.-
53-11180180 1.000- 0.000Trichoplax adhaerens Ebx/Arx-like protein mRNA, partial cds.-
54-11180180 1.000- 0.000Trichoplax adhaerens Lim1 mRNA, partial cds.-
55-11180180 1.000- 0.000Trichoplax adhaerens Lim3/4 mRNA, partial cds.-
56-11180180 1.000- 0.000Trichoplax adhaerens Arx1 mRNA, partial cds.-
57-11180180 1.000- 0.000Trichoplax adhaerens Arx2 mRNA, partial cds.-
58-11180180 1.000- 0.000Trichoplax adhaerens Prd/Pax-like protein mRNA, partial cds.-
59-11180180 1.000- 0.000Trichoplax adhaerens PaxB mRNA, partial cds.-
60-11180180 1.000- 0.000Trichoplax adhaerens Pitx mRNA, partial cds.-
61-11180180 1.000- 0.000Trichoplax adhaerens NK5/Hmx mRNA, partial cds.-
62-11180180 1.000- 0.000Trichoplax adhaerens Hex mRNA, partial cds.-
63-11180180 1.000- 0.000Trichoplax adhaerens Not mRNA, partial cds.-
64-11180180 1.000- 0.000Trichoplax adhaerens Dlx mRNA, partial cds.-
65-11180180 1.000- 0.000Trichoplax adhaerens Trox-2/Gsx mRNA, partial cds.-
66-11180180 1.000- 0.000Trichoplax adhaerens Gsc mRNA, partial cds.-
67-11180180 1.000- 0.000Trichoplax adhaerens NK-like protein 1 mRNA, partial cds.-
68-11180180 1.000- 0.000Trichoplax adhaerens Mnx mRNA, partial cds.-
69-11180180 1.000- 0.000Trichoplax adhaerens NK-like protein 2 mRNA, partial cds.-
70-11180180 1.000- 0.000Trichoplax adhaerens NK6 mRNA, partial cds.-
71-11180180 1.000- 0.000Trichoplax adhaerens Hox/ext.Hox-like protein mRNA, partial cds.-
72-11180180 1.000- 0.000Trichoplax adhaerens Dbx/Hlx mRNA, partial cds.-
73-11180180 1.000- 0.000Trichoplax adhaerens NK2a mRNA, partial cds.-
74-11180180 1.000- 0.000Trichoplax adhaerens NK2b mRNA, partial cds.-
75-11180180 1.000- 0.000Trichoplax adhaerens NK2c mRNA, partial cds.-
76-11799799 1.000- 0.000Trichoplax adhaerens ribosomal protein S5 (rps5) gene, partial cds.-
77-11442442 1.000- 0.000Trichoplax sp. H3 18S ribosomal RNA gene, partial sequence.-
78-66956956 1.000- 0.000Trichoplax sp. BZ413 PTTG1IP gene, complete cds.
79-66641641 1.000- 0.000Trichoplax sp. BZ413 signal peptidase gene, partial cds.
80-66808808 1.000- 0.000Trichoplax sp. BZ413 signal peptidase gene, partial cds.
81-91020422042 1.000- 0.000Trichoplax sp. BZ264 unknown gene.
82-44573573 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial cds.
83-44233233 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial sequence.
84-44798798 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial cds.
85-6814451454 0.998- 0.000Trichoplax sp. BZ46 phospholipase A21 precursor, gene, partial cds.
86-55484780 0.891- 0.000Trichoplax sp. BZ413 glutathione S-transferase (GST) gene, partial sequence.
87-55813813 1.000- 0.000Trichoplax sp. BZ46 glutathione S-transferase (GST) gene, complete cds.
88-88477477 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial cds.
89-88651651 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial cds.
90-88354354 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial sequence.
91-4949114150 0.791- 0.000Placozoan sp. BZ227 16S ribosomal RNA gene, partial sequence; mitochondrial.
92-559090 1.000- 0.000Placozoan sp. BZC12 16S ribosomal RNA gene, partial sequence; mitochondrial.
93-1111119119 1.000- 0.000Placozoan sp. BZ516 16S ribosomal RNA gene, partial sequence; mitochondrial.
94-11781781 1.000- 0.000Placozoa sp. H2 heat shock 70kDa protein 8 mRNA, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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