Cluster set at subtree whose root is 'Placozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
5-7712021787 0.944- 0.000Trichoplax sp. 18S rRNA gene.
6-948662913 0.774- 0.000Trichoplax adhaerens 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
18-7779241933 0.350- 0.000Trichoplax adhaerens 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
19-6729463198 0.983- 0.000Trichoplax sp. H7 28S ribosomal RNA gene, partial sequence.
78-66956956 1.000- 0.000Trichoplax sp. BZ413 PTTG1IP gene, complete cds.
79-66641641 1.000- 0.000Trichoplax sp. BZ413 signal peptidase gene, partial cds.
80-66808808 1.000- 0.000Trichoplax sp. BZ413 signal peptidase gene, partial cds.
81-91020422042 1.000- 0.000Trichoplax sp. BZ264 unknown gene.
82-44573573 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial cds.
83-44233233 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial sequence.
84-44798798 1.000- 0.000Trichoplax sp. BZ413 clathrin light chain (CLTA) gene, partial cds.
85-6814451454 0.998- 0.000Trichoplax sp. BZ46 phospholipase A21 precursor, gene, partial cds.
86-55484780 0.891- 0.000Trichoplax sp. BZ413 glutathione S-transferase (GST) gene, partial sequence.
87-55813813 1.000- 0.000Trichoplax sp. BZ46 glutathione S-transferase (GST) gene, complete cds.
88-88477477 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial cds.
89-88651651 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial cds.
90-88354354 1.000- 0.000Trichoplax sp. BZ46 unknown gene, partial sequence.
91-4949114150 0.791- 0.000Placozoan sp. BZ227 16S ribosomal RNA gene, partial sequence; mitochondrial.
92-559090 1.000- 0.000Placozoan sp. BZC12 16S ribosomal RNA gene, partial sequence; mitochondrial.
93-1111119119 1.000- 0.000Placozoan sp. BZ516 16S ribosomal RNA gene, partial sequence; mitochondrial.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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