Cluster set at subtree whose root is 'Hyperoartia'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-2214012319 0.802- 0.000Lampetra planeri dystrophin mRNA, partial cds.-
1-2211031138 0.985- 0.000Lampetra planeri large subunit ribosomal RNA gene, partial sequence.-
2-11181181 1.000- 0.000L.planeri partial engrailed related homeobox gene (En).-
3-227171 1.000- 0.000L.zanandreai mitochondrial tRNA-Glu gene.-
4-2456270384 0.989- 0.000Mordacia mordax cytochrome b gene, partial cds; mitochondrial.
5-11269269 1.000- 0.000Lampetra planeri partial whn gene for whn transription factor, exon A.-
6-11244244 1.000- 0.000Lampetra planeri partial whn gene for whn transcription factor, exon B.-
7-11333333 1.000- 0.000Lampetra planeri partial whn gene for whn transcription factor, exon C.-
8-278282 1.000- 0.000Lampetra planeri homeobox protein LpHox1C gene, partial cds.-
9-228282 1.000- 0.000Lampetra planeri homeobox protein LpHox2A gene, partial cds.-
10-228282 1.000- 0.000Lampetra planeri homeobox protein LpHox3A gene, partial cds.-
11-2108282 1.000- 0.000Lampetra planeri homeobox protein LpHox4-7C gene, partial cds.-
12-248282 1.000- 0.000Lampetra planeri homeobox protein LpHox8A gene, partial cds.-
13-278282 1.000- 0.000Lampetra planeri homeobox protein LpHox9B gene, partial cds.-
14-238282 1.000- 0.000Lampetra planeri homeobox protein LpHox10A gene, partial cds.-
15-118282 1.000- 0.000Lampetra planeri homeobox protein LpHox1 gene, partial cds.-
16-23562600 0.974- 0.000Lampetra planeri partial mRNA for paired superclass homeobox transcription factor (pitxa gene).-
17-44905542102 0.735- 0.000Eudontomyzon mariae mitochondrial partial cytb gene, atpase 8 gene and partial atpase 6 gene.
18-1750351720 0.588- 0.000Ichthyomyzon bdellium voucher B16 NADH dehydrogenase subunit 3 (ND3) gene, complete cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
19-4710041005 1.000- 0.000Eudontomyzon mariae haplotype Ema52 cytochrome oxidase subunit I gene, partial cds; and tRNA-Ser and tRNA-Asp genes, complete sequence; mitochondrial.
20-57463492 0.950- 0.000Lampetra ayresii 16S ribosomal RNA gene, partial sequence; mitochondrial.
21-125314701119 0.558- 0.000Ichthyomyzon fossor voucher F02 NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and D-loop, complete sequence; mitochondrial.
22-456758872 0.879- 0.000Ichthyomyzon unicuspis voucher U03 ATPase subunit 8 (ATPase8) and ATPase subunit 6 (ATPase6) genes, complete cds; mitochondrial.
23-6344741095 0.636- 0.000Lethenteron reissneri mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, southern form.
24-3108402714 0.709- 0.000Lampetra planeri clone DD#03 Vlr protein (vlr) mRNA, partial cds.-
25-3228411660 0.780- 0.000Lampetra planeri clone CMS48 Vlr protein (vlr) mRNA, partial cds.-
26-4228781727 0.890- 0.000Lampetra appendix clone LaVLR.35 variable lymphocyte receptor mRNA, complete cds.
27-12397580 0.842- 0.000Lampetra planeri dystrobrevin long isoform mRNA, partial cds, alternatively spliced.-
28-5295862647 0.521- 0.000Entosphenus tridentatus voucher trid11 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp and tRNA-Ala genes, complete sequence; and tRNA-Asn gene, partial sequence; mitochondrial.
29-11299299 1.000- 0.000Entosphenus tridentatus voucher 3399-24 NADH dehydrogenase subunit 2 (ND2) gene, partial cds; tRNA-Trp gene, complete sequence; and tRNA-Ala gene, partial sequence; mitochondrial.-
30-6275561015 0.910- 0.000Entosphenus tridentatus voucher 64-20 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; tRNA-His, tRNA-Ser, and tRNA-Leu genes, complete sequence; and NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
31-11283283 1.000- 0.000Lampetra aepyptera haplotype OUVC11027 control region, partial sequence; mitochondrial.-
32-3317791785 0.999- 0.000Lampetra aepyptera 18S ribosomal RNA (18S rRNA), 5' end.-
33-11631631 1.000- 0.000Lethenteron reissneri mRNA for triose phosphate isomerase, partial cds.-
34-11980980 1.000- 0.000Lethenteron reissneri mRNA for calreticulin, partial cds.-
35-1212831297 0.995- 0.000Lethenteron reissneri mRNA for enolase-2, partial cds.-
36-1117851785 1.000- 0.000Lethenteron reissneri mRNA for RNA polymerase II largest subunit, partial cds.-
37-1116141614 1.000- 0.000Lethenteron reissneri mRNA for RNA polymerase III largest subunit, partial cds.-
38-1113291329 1.000- 0.000Lampetra reissneri mRNA for FGFR3/4, partial cds.-
39-1111531153 1.000- 0.000Lampetra reissneri mRNA for EphB, partial cds.-
40-1111221122 1.000- 0.000Lampetra reissneri mRNA for EphC, partial cds.-
41-11799799 1.000- 0.000Lampetra reissneri mRNA for src-like A, partial cds.-
42-1110231023 1.000- 0.000Lampetra reissneri mRNA for src-like B, partial cds.-
43-11966966 1.000- 0.000Lampetra reissneri mRNA for kit-like A, partial cds.-
44-1110441044 1.000- 0.000Lampetra reissneri mRNA for kit-like B, partial cds.-
45-2222713536 0.821- 0.000Lampetra reissneri TBP mRNA for TATA-box binding protein, partial cds.-
46-12775793 0.989- 0.000Lampetra reissneri LrKIF1B mRNA for KIF1-like protein B, partial cds.-
47-11272272 1.000- 0.000Lethenteron reissneri DNA, SINE sequence, clone: 1.-
48-11153153 1.000- 0.000Lethenteron reissneri DNA, SINE sequence, clone: 2.-
49-11264264 1.000- 0.000Lethenteron reissneri DNA, SINE sequence, clone: 3.-
50-11286286 1.000- 0.000Lethenteron reissneri DNA, SINE sequence, clone: 4.-
51-11222222 1.000- 0.000Lethenteron reissneri DNA, SINE sequence, clone: 6.-
52-1115941594 1.000- 0.000Lethenteron reissneri G6PD mRNA for glucose-6-phosphate 1-dehydrogenase, partial cds.-
53-1111761176 1.000- 0.000Lethenteron reissneri PGK mRNA for phosphoglycerate kinase, partial cds.-
54-24120121 0.994- 0.000Lampetra reissneri 5S rRNA.-
55-1113881388 1.000- 0.000Mordacia mordax POC gene for proopiocortin, partial cds.-
56-11538538 1.000- 0.000Mordacia mordax pom gene for proopiomelanotropin, partial cds.-
57-11480480 1.000- 0.000Mordacia mordax MmoCOP mRNA for coatomer protein complex, subunit epsilon, partial cds.-
58-23104104 1.000- 0.000Geotria australis GaHh-alpha gene for hedgehog homolog, partial cds.-
59-2214721751 0.920- 0.000Mordacia mordax MmoEF1a mRNA for elongation factor 1 alpha, partial cds.-
60-11360360 1.000- 0.000Mordacia mordax MmoRPL7 mRNA for ribosomal protein L7, partial cds.-
61-11360360 1.000- 0.000Mordacia mordax MmoRPL10 mRNA for ribosomal protein L10, partial cds.-
62-11414414 1.000- 0.000Mordacia mordax MmoHsp90-1 mRNA for heat shock protein 90 homolog 1, partial cds.-
63-11928928 1.000- 0.000Mordacia mordax MmoDlxA mRNA for homeobox-containing Dlx homolog, partial cds.-
64-11781781 1.000- 0.000Mordacia mordax MmoHox10s mRNA for Hox10 homolog, partial cds.-
65-119393 1.000- 0.000Mordacia mordax MmoHox9-1 mRNA for Hox9 homolog, partial cds.-
66-11232232 1.000- 0.000Mordacia mordax MmoRPS9 mRNA for ribosomal protein S9, partial cds.-
67-11949949 1.000- 0.000Mordacia mordax MmoHox11-1 mRNA for Hox11 homolog, partial cds.-
68-11666666 1.000- 0.000Mordacia mordax preprogonadotropin-releasing hormone III mRNA, complete cds.-
69-139181539 0.797- 0.000Mordacia mordax MmoRAR2 mRNA for retinoic acid receptor 2, partial cds.-
70-540627652 0.993- 0.000Lampetra appendix voucher ROM:ICH:BCF-0001-1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
71-514966966 1.000- 0.000Ichthyomyzon greeleyi voucher G18 NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
72-512761763 0.998- 0.000Ichthyomyzon greeleyi voucher G12 tRNA-Asp gene, complete sequence; and cytochrome oxidase subunit 2 (COII) gene, complete cds; mitochondrial.
73-36786786 1.000- 0.000Ichthyomyzon unicuspis voucher U03 cytochrome oxidase subunit 3 (COIII) gene, complete cds; mitochondrial.-
74-5206351029 0.854- 0.000Ichthyomyzon greeleyi voucher G11 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
75-256911056 0.930- 0.000Ichthyomyzon fossor voucher F03 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.-
76-2611031103 1.000- 0.000Ichthyomyzon unicuspis voucher U02 cytochrome b (cytb) pseudogene, partial sequence; and tRNA-Pro, tRNA-Phe, and 12S ribosomal RNA pseudogenes, complete sequence, nuclear copies of mitochondrial genes.-
77-1159765976 1.000- 0.000Lamprey vitellogenin mRNA, complete cds.-
78-11547547 1.000- 0.000Ichthyomyzon unicuspis glutamate decarboxylase GAD mRNA, partial cds.-
79-66710732 0.987- 0.000Lampetra tridentatus preprogonadotropin-releasing hormone III mRNA, complete cds.
80-11504504 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun8 sequence.-
81-11371371 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun1 sequence.-
82-11524524 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun2 sequence.-
83-11428428 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun3 sequence.-
84-11691691 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun4 sequence.-
85-11632632 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun5 sequence.-
86-11648648 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun6 sequence.-
87-11485485 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun7 sequence.-
88-11460460 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun9 sequence.-
89-11488488 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun10 sequence.-
90-11373373 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun11 sequence.-
91-11672672 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun12 sequence.-
92-11547547 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun13 sequence.-
93-11489489 1.000- 0.000Ichthyomyzon unicuspis microsatellite Iun14 sequence.-
94-11659659 1.000- 0.000L.zanandreai glb mRNA.-
95-35677711 0.975- 0.000L.zanandreai glb mRNA.-
96-1110561056 1.000- 0.000Geotria australis CNP mRNA for C-type natriuretic peptide, complete cds.-
97-11669669 1.000- 0.000Geotria australis POC mRNA for proopiocortin, partial cds.-
98-11739739 1.000- 0.000Geotria australis POM gene for proopiomelanotropin, partial cds.-
99-11774774 1.000- 0.000Geotria australis preprogonadotropin-releasing hormone III mRNA, complete cds.-
100-3310951666 0.826- 0.000Geotria australis red-sensitive retinal pigment mRNA, complete cds.-
101-1110861086 1.000- 0.000Geotria australis blue-sensitive retinal pigment mRNA, complete cds.-
102-2310621145 0.953- 0.000Geotria australis retinal rod pigment RhB mRNA, complete cds.-
103-1110381038 1.000- 0.000Geotria australis UV-sensitive retinal pigment mRNA, complete cds.-
104-11170170 1.000- 0.000Geotria australis 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.-
105-1114651465 1.000- 0.000Geotria australis 28S ribosomal RNA gene, partial sequence.-
106-1115201520 1.000- 0.000Geotria australis 28S ribosomal RNA gene, partial sequence.-
107-2210191325 0.884- 0.000Lampetra appendix transthyretin (TTR) mRNA, complete cds.-
108-33437675 0.858- 0.000Ichthyomyzon gagei neuropeptide Y (NPY) mRNA, complete cds.-
109-22556568 0.989- 0.000Ichthyomyzon gagei peptide methionine tyrosine (PMY) mRNA, complete cds.-
110-33722929 0.876- 0.000Ichthyomyzon gagei peptide YY (PYY) mRNA, complete cds.-
111-11471471 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 002-2.-
112-11347347 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 005.-
113-16439769 0.684- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 021b.-
114-11579579 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 013.-
115-11152152 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 019c.-
116-11679679 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 024-2.-
117-11659659 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 036-2.-
118-11833833 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 050.-
119-11210210 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 051.-
120-11552552 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 059.-
121-11684684 1.000- 0.000Lethenteron sp. N DNA, microsatellite loci Lspn 094.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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