Cluster set at subtree whose root is 'Hyperoartia'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
4-2456270384 0.989- 0.000Mordacia mordax cytochrome b gene, partial cds; mitochondrial.
17-44905542102 0.735- 0.000Eudontomyzon mariae mitochondrial partial cytb gene, atpase 8 gene and partial atpase 6 gene.
18-1750351720 0.588- 0.000Ichthyomyzon bdellium voucher B16 NADH dehydrogenase subunit 3 (ND3) gene, complete cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
19-4710041005 1.000- 0.000Eudontomyzon mariae haplotype Ema52 cytochrome oxidase subunit I gene, partial cds; and tRNA-Ser and tRNA-Asp genes, complete sequence; mitochondrial.
20-57463492 0.950- 0.000Lampetra ayresii 16S ribosomal RNA gene, partial sequence; mitochondrial.
21-125314701119 0.558- 0.000Ichthyomyzon fossor voucher F02 NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and D-loop, complete sequence; mitochondrial.
22-456758872 0.879- 0.000Ichthyomyzon unicuspis voucher U03 ATPase subunit 8 (ATPase8) and ATPase subunit 6 (ATPase6) genes, complete cds; mitochondrial.
23-6344741095 0.636- 0.000Lethenteron reissneri mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, southern form.
26-4228781727 0.890- 0.000Lampetra appendix clone LaVLR.35 variable lymphocyte receptor mRNA, complete cds.
28-5295862647 0.521- 0.000Entosphenus tridentatus voucher trid11 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp and tRNA-Ala genes, complete sequence; and tRNA-Asn gene, partial sequence; mitochondrial.
30-6275561015 0.910- 0.000Entosphenus tridentatus voucher 64-20 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; tRNA-His, tRNA-Ser, and tRNA-Leu genes, complete sequence; and NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
70-540627652 0.993- 0.000Lampetra appendix voucher ROM:ICH:BCF-0001-1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
71-514966966 1.000- 0.000Ichthyomyzon greeleyi voucher G18 NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
72-512761763 0.998- 0.000Ichthyomyzon greeleyi voucher G12 tRNA-Asp gene, complete sequence; and cytochrome oxidase subunit 2 (COII) gene, complete cds; mitochondrial.
74-5206351029 0.854- 0.000Ichthyomyzon greeleyi voucher G11 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
79-66710732 0.987- 0.000Lampetra tridentatus preprogonadotropin-releasing hormone III mRNA, complete cds.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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