Cluster set at subtree whose root is 'Malawimonadidae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-11766766 1.000- 0.000Malawimonas jakobiformis topoisomerase 6A (Spo11-3) gene, partial cds.-
1-1111531153 1.000- 0.000Malawimonas jakobiformis alpha-tubulin gene, partial cds.-
2-1211621162 1.000- 0.000Malawimonas jakobiformis clone 1 beta-tubulin gene, partial cds.-
3-1119491949 1.000- 0.000Malawimonas jakobiformis chaperonin subunit alpha gene, partial cds.-
4-1114721472 1.000- 0.000Malawimonas jakobiformis chaperonin subunit delta gene, partial cds.-
5-1213171318 1.000- 0.000Malawimonas jakobiformis partial 16S rRNA gene, clone MFC-EB25.-
6-1218651867 0.999- 0.000Malawimonas jakobiformis small subunit ribosomal RNA gene, complete sequence.-
7-11493493 1.000- 0.000Malawimonas jakobiformis glycosyl hydrolase mRNA, partial cds.-
8-12488735 0.832- 0.000Malawimonas jakobiformis Rpl7A mRNA, partial cds.-
9-11245245 1.000- 0.000Malawimonas jakobiformis isolate MJL00000683 Rpl7A gene, partial cds.-
10-11689689 1.000- 0.000Malawimonas jakobiformis Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.-
11-1117241724 1.000- 0.000Malawimonas jakobiformis cytosolic heat shock protein 90 (HSP90) gene, partial cds.-
12-1119371937 1.000- 0.000Malawimonas jakobiformis cytosolic heat shock protein 70 (HSP70) gene, partial cds.-
13-2211861448 0.910- 0.000Malawimonas californiana elongation factor 1 alpha mRNA, complete cds.-
14-1122772277 1.000- 0.000Malawimonas jakobiformis translation elongation factor 2 (EF-2) gene, partial cds.-
15-11507507 1.000- 0.000Malawimonas jakobiformis enoyl-CoA hydratase-like protein mRNA, partial cds.-
16-11600600 1.000- 0.000Malawimonas jakobiformis hydroxyacid dehydrogenase-like protein mRNA, partial cds.-
17-11453453 1.000- 0.000Malawimonas jakobiformis quinone oxidoreductase-like protein mRNA, partial cds.-
18-11883883 1.000- 0.000Malawimonas jakobiformis actin gene, partial cds.-
19-11858858 1.000- 0.000Malawimonas californiana ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.-
20-11514514 1.000- 0.000Malawimonas californiana Rpl7A gene, partial cds.-
21-11690690 1.000- 0.000Malawimonas californiana guanine deaminase-like protein mRNA, partial cds.-
22-11531531 1.000- 0.000Malawimonas californiana decarboxylase mRNA, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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