Cluster set at subtree whose root is 'Nucleariidae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-6817313018 0.754- 0.000Nuclearia moebiusi 18S small subunit ribosomal RNA, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA, partial sequence.
1-11705705 1.000- 0.000Nuclearia moebiusi strain CCAP1552/3 beta-tubulin gene, partial cds.-
2-1136913691 1.000- 0.000Nuclearia simplex 28S large subunit ribosomal RNA gene, complete sequence.-
3-237841128 0.832- 0.000Nuclearia simplex actin mRNA, complete cds.-
4-1112831283 1.000- 0.000Nuclearia simplex strain CCAP1552/4 ef1a mRNA, partial cds.-
5-1114161416 1.000- 0.000Nuclearia simplex strain CCAP1552/4 HSP70 mRNA, partial cds.-
6-11993993 1.000- 0.000Nuclearia simplex strain CCAP1552/4 alpha-tubulin mRNA, partial cds.-
7-22937939 0.999- 0.000Nuclearia sp. W3 small subunit ribosomal RNA gene, partial sequence.-
8-11977977 1.000- 0.000Nuclearia sp. 2H small subunit ribosomal RNA gene, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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